Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.4e-268 926.8 451 100.0
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.9e-225 784.6 402 94.5
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.1e-173 612.8 469 65.7
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 8.6e-172 607.4 469 66.1
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 6.4e-167 591.3 469 64.0
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 7.8e-165 584.3 470 63.6
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-161 573.5 461 63.8
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.9e-161 571.2 463 63.7
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.5e-160 570.1 456 63.6
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 9.9e-160 567.4 460 63.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.5e-157 558.9 460 60.2
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 4.6e-157 558.5 463 60.0
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 6.0e-157 558.1 471 58.4
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 7.8e-157 557.8 471 59.7
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 3.0e-156 555.8 463 59.8
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.9e-156 555.4 462 59.1
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.5e-155 553.5 467 59.1
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 4.3e-155 552.0 469 58.2
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.8e-154 549.3 470 56.6
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 6.2e-154 548.1 470 58.5
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 6.2e-154 548.1 466 59.4
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 8.1e-154 547.7 470 59.6
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.1e-153 547.4 443 60.7
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.4e-153 547.0 470 56.6
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.8e-153 546.6 472 57.8
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.0e-153 545.4 465 60.2
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 4.0e-153 545.4 470 56.6
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 9.0e-153 544.3 472 58.5
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.2e-152 543.9 471 59.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.9e-152 540.8 465 59.8
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 9.9e-152 540.8 472 57.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.3e-151 540.4 440 62.0
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-151 540.4 464 58.6
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.7e-151 540.0 465 59.8
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.7e-151 540.0 471 58.0
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 2.2e-151 539.7 467 58.7
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.2e-151 539.7 469 57.6
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.8e-151 538.9 464 58.6
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 3.8e-151 538.9 473 56.4
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.9e-151 538.5 471 57.5
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 4.9e-151 538.5 468 58.5
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.4e-151 537.7 471 57.5
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 8.4e-151 537.7 464 58.4
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.4e-150 537.0 470 58.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.9e-150 536.6 469 58.0
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 4.2e-150 535.4 437 60.9
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 9.3e-150 534.3 455 58.5
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.6e-149 533.5 465 58.7
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.1e-149 533.1 456 58.6
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 3.5e-149 532.3 479 56.8
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 3.5e-149 532.3 423 62.2
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 6.0e-149 531.6 479 56.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.5e-147 526.2 468 56.8
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.5e-147 526.2 470 57.7
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.3e-147 525.8 470 56.6
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.3e-147 525.8 458 59.0
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 5.6e-147 525.0 474 55.5
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 4.8e-146 521.9 467 56.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 8.1e-146 521.2 428 59.6
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.8e-145 520.0 467 56.7
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.3e-145 518.5 467 55.9
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.9e-145 518.1 470 57.9
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.6e-144 516.2 464 56.9
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 7.6e-144 514.6 428 58.6
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.7e-143 513.5 471 55.6
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.9e-143 512.7 427 58.8
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 4.9e-143 511.9 423 59.6
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.9e-143 511.9 422 59.2
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.4e-142 509.6 421 59.4
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.0e-140 502.7 423 60.0
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.9e-140 502.3 423 60.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.7e-140 501.5 423 60.0
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.5e-139 500.4 465 55.7
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 3.3e-139 499.2 468 56.2
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 4.3e-139 498.8 462 55.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.8e-138 496.1 470 53.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 6.2e-138 495.0 468 53.2
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.4e-137 493.0 478 53.1
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 6.7e-132 474.9 423 56.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 2.5e-131 473.0 420 56.4
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 3.3e-131 472.6 451 54.5
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-129 467.6 471 50.7
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.8e-129 466.8 467 51.0
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 5.3e-129 465.3 471 51.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.5e-128 463.8 465 52.0
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.0e-127 461.1 465 50.8
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.7e-127 460.3 478 50.8
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.9e-127 459.5 450 54.4
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 5.0e-127 458.8 470 50.0
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 3.6e-125 452.6 387 56.3
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 3.0e-124 449.5 471 49.5
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.3e-123 445.7 421 52.3
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.3e-122 444.1 462 50.0
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.7e-122 442.6 462 50.4
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.8e-122 442.2 462 49.8
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.4e-121 440.7 462 49.6
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.8e-121 440.3 465 50.8
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-121 439.9 455 49.5
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 4.1e-121 439.1 455 49.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.3e-121 438.7 463 49.2
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.2e-120 437.6 469 49.5
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 1.5e-120 437.2 471 48.2
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.5e-120 437.2 465 51.8
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-120 436.8 456 48.9
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.0e-120 436.8 455 49.0
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.0e-120 436.8 456 50.0
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.6e-120 436.4 455 49.0
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 3.4e-120 436.0 462 50.0
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.7e-120 434.9 463 49.2
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 7.7e-120 434.9 455 51.2
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-119 434.1 460 48.3
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 2.9e-119 433.0 456 48.5
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.9e-119 433.0 468 49.4
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 5.0e-119 432.2 460 48.7
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 8.5e-119 431.4 457 49.9
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 8.5e-119 431.4 459 50.3
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 8.5e-119 431.4 460 48.5
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 8.5e-119 431.4 454 49.6
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-118 429.9 460 48.0
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.5e-118 429.9 426 51.6
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-117 427.6 450 50.0
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-117 427.6 450 50.0
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-117 427.2 460 49.3
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-117 427.2 460 49.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.6e-117 426.0 449 49.0
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 6.1e-117 425.2 450 50.0
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.0e-116 424.5 324 65.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.0e-116 424.5 324 65.1
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.9e-116 422.5 468 47.2
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 5.1e-116 422.2 455 46.8
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 5.1e-116 422.2 450 49.8
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 5.1e-116 422.2 455 46.8
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.5e-115 420.6 455 47.5
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-115 420.2 455 47.3
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-114 417.5 458 47.8
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 6.3e-114 415.2 468 46.6
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 5.3e-113 412.1 416 50.5
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 7.0e-113 411.8 416 50.2
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.6e-112 409.8 418 49.0
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.2e-111 406.8 468 45.9
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-110 403.7 460 47.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.9e-110 403.7 466 45.3
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.1e-109 400.2 457 47.9
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 8.0e-109 398.3 420 47.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-107 394.4 432 46.8
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.2e-106 390.2 464 45.3
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-104 384.4 432 45.1
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.5e-104 382.9 432 45.6
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 4.5e-104 382.5 473 44.0
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 7.7e-104 381.7 466 43.8
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-102 377.1 432 45.1
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.4e-99 365.9 430 45.3
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-82 311.2 454 41.4
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.7e-80 303.5 341 45.2
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.5e-80 302.8 448 41.7
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.0e-72 277.3 274 52.6
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.5e-70 270.4 214 64.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-57 228.0 162 67.9
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 7.8e-56 222.2 204 51.0
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.0e-55 221.9 204 51.0
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.9e-54 217.6 176 61.9
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-48 198.0 165 59.4
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.6e-45 186.8 316 40.5
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.3e-42 178.3 219 47.0
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 5.1e-23 113.2 130 42.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 9.0e-20 102.4 278 33.1
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.0e-18 99.0 94 51.1
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 3.2e-17 94.0 94 44.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 5.1e-15 86.7 85 45.9
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 5.7e-14 83.2 87 44.8
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.2e-10 71.2 158 33.5
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-09 68.9 66 53.0


User provided reference genes

Program Settings