Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.3e-87 326.2 151 100.0
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 6.9e-65 250.8 124 90.3
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.1e-57 226.9 120 81.7
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 9.0e-57 223.8 123 76.4
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 9.0e-57 223.8 123 77.2
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.6e-56 222.2 123 76.4
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 5.8e-56 221.1 132 75.8
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 7.6e-56 220.7 123 74.8
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 9.9e-56 220.3 121 78.5
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.3e-55 219.9 121 76.9
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.3e-55 219.9 121 76.9
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 2.2e-55 219.2 121 77.7
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 3.8e-55 218.4 119 78.2
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 4.9e-55 218.0 115 79.1
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 4.9e-55 218.0 120 76.7
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 6.4e-55 217.6 124 74.2
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 8.4e-55 217.2 121 76.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.1e-54 216.9 121 76.9
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.1e-54 216.9 127 73.2
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.9e-54 216.1 115 78.3
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.4e-54 215.7 123 74.8
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 3.2e-54 215.3 142 66.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.2e-54 214.9 120 74.2
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.5e-54 214.5 121 76.0
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.5e-54 214.5 121 76.0
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 5.5e-54 214.5 119 77.3
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.1e-54 214.2 116 76.7
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 7.1e-54 214.2 116 76.7
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 7.1e-54 214.2 126 71.4
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 7.1e-54 214.2 139 68.3
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 9.3e-54 213.8 120 75.8
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 9.3e-54 213.8 123 73.2
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 9.3e-54 213.8 122 75.4
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.2e-53 213.4 122 73.8
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 1.2e-53 213.4 119 76.5
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.6e-53 213.0 139 66.2
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.6e-53 213.0 120 76.7
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.1e-53 212.6 126 74.6
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.1e-53 212.6 119 75.6
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.7e-53 212.2 124 71.8
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 3.5e-53 211.8 122 73.8
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 4.6e-53 211.5 120 72.5
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 7.9e-53 210.7 129 70.5
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 1.0e-52 210.3 120 71.7
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.0e-52 210.3 116 74.1
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 1.0e-52 210.3 126 73.8
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 1.3e-52 209.9 121 71.9
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 1.3e-52 209.9 119 75.6
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.3e-52 209.9 128 72.7
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.3e-52 209.9 116 75.0
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.8e-52 209.5 116 74.1
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.8e-52 209.5 148 63.5
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.8e-52 209.5 118 76.3
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 3.9e-52 208.4 116 76.7
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 5.1e-52 208.0 116 73.3
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 5.1e-52 208.0 116 73.3
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 5.1e-52 208.0 116 73.3
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 5.1e-52 208.0 116 73.3
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 5.1e-52 208.0 116 74.1
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 5.1e-52 208.0 116 74.1
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 5.1e-52 208.0 115 74.8
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.1e-52 208.0 114 76.3
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.1e-52 208.0 114 76.3
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 6.7e-52 207.6 120 70.0
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 8.7e-52 207.2 118 74.6
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 1.1e-51 206.8 121 71.9
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 1.1e-51 206.8 121 69.4
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 1.5e-51 206.5 121 70.2
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.9e-51 206.1 116 74.1
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.9e-51 206.1 121 69.4
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 2.5e-51 205.7 121 69.4
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 3.3e-51 205.3 120 70.8
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 7.4e-51 204.1 115 73.9
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 9.6e-51 203.8 120 69.2
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.6e-50 203.0 132 67.4
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 1.6e-50 203.0 120 74.2
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.1e-50 202.6 121 70.2
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 2.1e-50 202.6 135 66.7
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 2.8e-50 202.2 121 70.2
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 6.2e-50 201.1 119 68.9
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.4e-49 199.9 145 62.1
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.8e-49 199.5 119 73.9
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.2e-48 196.8 109 78.0
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 2.0e-48 196.1 131 65.6
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 5.8e-48 194.5 148 58.1
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.7e-47 193.0 119 69.7
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.4e-46 189.9 139 60.4
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 2.5e-46 189.1 167 53.9
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 5.5e-46 188.0 190 48.9
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.3e-44 183.3 114 69.3
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 5.1e-44 181.4 122 66.4
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 5.1e-44 181.4 114 66.7
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 6.7e-44 181.0 103 74.8
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 4.3e-43 178.3 123 60.2
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 7.4e-43 177.6 130 61.5
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.3e-42 176.8 130 62.3
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.3e-42 176.8 125 64.0
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 8.2e-42 174.1 93 78.5
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 8.2e-42 174.1 113 61.9
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.6e-40 169.1 134 59.7
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 1.0e-39 167.2 109 63.3
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 6.1e-37 157.9 165 48.5
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 6.1e-37 157.9 93 71.0
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 3.9e-36 155.2 116 58.6
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 3.9e-36 155.2 132 55.3
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 5.1e-36 154.8 111 58.6
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 5.7e-35 151.4 88 70.5
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.3e-34 150.2 126 56.3
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 6.3e-34 147.9 78 76.9
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.2e-30 135.6 102 54.9
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 8.8e-28 127.5 108 56.5
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 4.4e-27 125.2 138 41.3
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.4e-25 120.2 121 42.1
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.8e-25 119.8 57 86.0
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.4e-25 119.4 65 78.5
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 3.1e-25 119.0 89 60.7
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 3.1e-25 119.0 117 46.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 5.3e-25 118.2 63 77.8
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 9.1e-25 117.5 93 55.9
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.9e-24 114.8 122 45.9
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.7e-24 114.4 60 78.3
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.7e-23 113.2 81 67.9
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 5.0e-23 111.7 96 47.9
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 2.5e-22 109.4 66 69.7
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 2.1e-21 106.3 106 44.3
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 3.6e-21 105.5 70 62.9
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 3.3e-19 99.0 195 34.4
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 1.4e-17 93.6 104 44.2
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 2.4e-17 92.8 93 39.8
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.0e-12 77.4 74 45.9
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 1.2e-11 73.9 43 74.4
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 3.3e-11 72.4 42 73.8
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 7.5e-11 71.2 112 35.7
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 9.7e-11 70.9 65 55.4
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 1.3e-10 70.5 41 75.6
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 1.3e-10 70.5 38 78.9
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.8e-10 69.3 35 77.1
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 2.8e-10 69.3 35 77.1
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 6.5e-07 58.2 113 33.6


User provided reference genes

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