Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 3.7e-188 661.4 331 100.0
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 6.3e-71 271.9 319 44.8
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.5e-67 260.8 319 44.5
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.9e-67 260.4 279 49.1
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.6e-66 257.3 280 49.3
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 2.7e-66 256.5 278 47.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.3e-65 253.4 337 44.5
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.3e-65 253.4 304 46.4
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 5.2e-65 252.3 290 46.6
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 2.0e-64 250.4 262 50.4
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 2.6e-64 250.0 258 51.2
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 4.4e-64 249.2 265 49.1
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 5.7e-64 248.8 264 49.6
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 5.7e-64 248.8 264 49.6
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 9.8e-64 248.1 277 46.6
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 9.8e-64 248.1 310 47.4
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.3e-63 247.7 277 46.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.3e-63 247.7 265 49.1
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.7e-63 247.3 331 43.5
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.2e-63 246.9 276 48.2
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 2.8e-63 246.5 260 50.4
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 2.8e-63 246.5 260 50.4
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.8e-63 246.5 265 49.1
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.7e-63 246.1 278 47.8
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 4.8e-63 245.7 278 45.7
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.1e-62 244.6 232 53.0
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.4e-62 244.2 278 47.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.4e-62 244.2 280 47.9
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 3.1e-62 243.0 252 50.8
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 4.1e-62 242.7 233 52.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 9.1e-62 241.5 262 48.1
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.2e-61 241.1 262 47.7
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.6e-61 240.7 230 51.3
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.0e-61 240.4 234 53.0
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 3.5e-61 239.6 277 43.7
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.5e-61 239.2 304 44.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 5.9e-61 238.8 230 53.0
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 5.9e-61 238.8 335 41.8
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 7.7e-61 238.4 232 50.4
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.2e-60 236.9 241 50.6
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 3.8e-60 236.1 302 45.4
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 3.8e-60 236.1 278 47.1
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 5.0e-60 235.7 291 46.0
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 8.5e-60 235.0 201 57.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.9e-59 233.8 266 48.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 2.5e-59 233.4 312 43.6
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.5e-59 233.4 278 46.0
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 4.2e-59 232.6 212 53.8
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 5.5e-59 232.3 213 53.5
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 9.5e-59 231.5 230 50.4
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 9.5e-59 231.5 342 42.7
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.6e-58 230.7 278 45.3
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.6e-58 230.7 342 41.5
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 2.1e-58 230.3 215 52.1
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.6e-58 229.6 212 55.2
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 6.1e-58 228.8 260 47.7
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 2.3e-57 226.9 254 48.4
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.3e-57 226.9 254 48.4
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 4.0e-57 226.1 249 47.4
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 4.0e-57 226.1 230 50.4
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 6.8e-57 225.3 233 50.6
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 8.8e-57 224.9 203 54.7
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.5e-56 224.2 203 55.2
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.6e-56 223.4 356 37.9
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 3.4e-56 223.0 314 43.3
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 4.4e-56 222.6 230 50.9
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 5.7e-56 222.2 201 54.2
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 5.7e-56 222.2 280 43.6
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.8e-55 219.9 231 48.5
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.9e-55 219.2 212 50.5
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 8.3e-55 218.4 215 53.0
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 8.3e-55 218.4 209 51.2
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 3.1e-54 216.5 229 48.5
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 3.1e-54 216.5 328 39.9
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 4.1e-54 216.1 231 48.5
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 7.0e-54 215.3 229 48.0
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 7.0e-54 215.3 209 49.8
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.6e-53 214.2 249 47.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 2.0e-53 213.8 194 56.7
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.3e-51 206.1 247 46.2
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 9.5e-51 204.9 282 42.2
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 3.6e-50 203.0 256 46.5
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.0e-49 201.4 256 46.5
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.4e-49 201.1 273 42.5
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.0e-49 199.5 306 42.8
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 4.9e-47 192.6 237 43.0
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 6.4e-47 192.2 266 41.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 8.3e-47 191.8 213 47.9
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.8e-46 190.7 187 54.5
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.8e-46 190.7 202 48.5
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.2e-46 189.9 199 48.7
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.4e-46 189.1 202 52.5
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-44 184.1 243 42.0
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 5.6e-43 179.1 179 49.7
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.2e-42 177.9 336 34.8
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.1e-41 173.3 310 38.1
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.1e-41 173.3 326 35.9
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.4e-40 169.9 218 41.7
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 5.8e-40 169.1 230 41.7
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 9.8e-40 168.3 220 41.4
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 6.4e-39 165.6 265 37.7
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.4e-38 164.5 194 44.3
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.9e-38 164.1 250 42.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.4e-38 163.7 236 41.1
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 9.2e-38 161.8 193 46.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.3e-36 157.9 243 39.5
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 8.6e-36 155.2 235 38.7
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.9e-35 154.1 200 42.5
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.3e-35 153.3 222 43.2
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 2.8e-34 150.2 214 39.7
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 6.2e-34 149.1 235 39.1
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 8.1e-34 148.7 214 39.7
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.4e-33 147.9 162 46.9
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.5e-32 144.4 307 33.6
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 2.0e-32 144.1 247 36.4
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 9.8e-32 141.7 218 39.0
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.3e-31 141.4 161 47.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.7e-31 139.8 128 55.5
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.2e-30 136.7 237 35.9
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.6e-29 134.4 273 33.7
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 4.6e-29 132.9 286 36.4
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 7.8e-29 132.1 245 34.7
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.3e-28 131.3 306 32.4
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.9e-28 129.8 227 38.3
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 6.6e-28 129.0 125 52.8
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 6.6e-28 129.0 129 48.8
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.5e-27 127.1 335 31.6
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 7.3e-27 125.6 168 42.9
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.6e-26 124.4 110 51.8
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 4.7e-26 122.9 191 38.7
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.8e-25 120.9 117 55.6
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-24 118.2 113 54.9
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.4e-22 110.5 156 41.7
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.1e-22 109.8 87 60.9
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 9.2e-22 108.6 242 31.0
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.2e-21 108.2 109 47.7
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 5.1e-20 102.8 236 32.2
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.2e-18 98.2 102 49.0
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.8e-18 97.1 75 60.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-17 95.1 70 60.0
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-14 85.1 75 52.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-13 79.7 102 36.3
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 3.9e-12 76.6 170 34.1
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.1e-11 75.1 70 57.1
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.3e-10 71.6 72 50.0
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.4e-06 57.4 80 38.8
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.2e-06 57.0 45 55.6


User provided reference genes

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