Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 7.5e-116 420.6 225 100.0
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 8.3e-107 390.6 219 95.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.4e-77 293.5 203 75.4
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.3e-77 292.7 205 75.1
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.1e-77 292.4 203 73.9
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 5.2e-77 291.6 222 68.9
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.2e-77 291.6 223 70.0
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 5.2e-77 291.6 223 69.5
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 6.8e-77 291.2 229 69.4
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 6.8e-77 291.2 203 73.9
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 8.9e-77 290.8 211 73.9
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 1.5e-76 290.0 203 73.4
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 2.6e-76 289.3 222 68.9
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 5.8e-76 288.1 215 68.4
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 7.6e-76 287.7 222 68.9
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 9.9e-76 287.3 203 72.4
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.3e-75 287.0 203 72.9
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.7e-75 286.6 203 71.9
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.7e-75 286.6 222 67.6
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 4.9e-75 285.0 203 71.9
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 4.9e-75 285.0 225 68.0
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.1e-74 283.9 205 70.7
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.4e-74 282.7 214 67.8
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 2.4e-74 282.7 211 69.7
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 2.4e-74 282.7 215 69.3
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 2.4e-74 282.7 207 71.0
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 7.1e-74 281.2 216 66.7
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 9.2e-74 280.8 211 68.7
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-73 280.4 211 68.7
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-73 280.4 211 68.7
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 1.2e-73 280.4 215 68.8
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.6e-73 280.0 214 67.8
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 2.1e-73 279.6 203 70.0
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 4.6e-73 278.5 214 66.8
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 4.6e-73 278.5 203 70.9
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 4.6e-73 278.5 203 70.0
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 4.6e-73 278.5 203 70.0
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.0e-72 277.3 206 70.4
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 1.0e-72 277.3 203 70.4
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.3e-72 276.9 203 69.5
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 1.7e-72 276.6 203 69.5
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.3e-72 276.2 219 65.8
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 2.3e-72 276.2 206 69.9
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 2.3e-72 276.2 206 69.9
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.9e-72 275.4 203 70.4
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.1e-71 273.9 222 66.2
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.5e-71 273.5 222 64.4
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 1.9e-71 273.1 203 69.0
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 3.3e-71 272.3 203 69.0
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.3e-71 272.3 214 65.9
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 5.6e-71 271.6 203 69.5
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 7.3e-71 271.2 204 67.2
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.2e-70 270.4 203 68.0
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 2.8e-70 269.2 202 68.8
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.8e-70 269.2 203 68.5
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 3.6e-70 268.9 203 69.0
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 3.6e-70 268.9 208 68.8
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 8.1e-70 267.7 201 69.2
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 8.1e-70 267.7 229 64.6
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.1e-69 267.3 202 68.3
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.1e-69 267.3 209 66.0
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 2.4e-69 266.2 201 68.7
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 3.1e-69 265.8 203 67.0
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 3.1e-69 265.8 202 68.3
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 4.0e-69 265.4 229 62.9
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 4.0e-69 265.4 202 67.8
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 6.8e-69 264.6 219 62.6
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.2e-68 263.8 202 67.3
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 2.0e-68 263.1 203 66.5
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.4e-68 261.9 192 69.8
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 4.4e-68 261.9 203 65.5
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 7.6e-68 261.2 203 66.0
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 9.9e-68 260.8 211 65.4
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 9.9e-68 260.8 223 64.1
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 1.3e-67 260.4 203 66.0
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.3e-67 260.4 203 65.0
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 1.3e-67 260.4 203 65.5
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 2.9e-67 259.2 203 65.0
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 3.8e-67 258.8 203 68.0
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 4.9e-67 258.5 219 61.6
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 4.9e-67 258.5 198 67.2
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 4.9e-67 258.5 198 67.2
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 6.4e-67 258.1 203 64.5
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 8.4e-67 257.7 214 62.1
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 8.4e-67 257.7 216 62.0
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 8.4e-67 257.7 214 64.5
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 8.4e-67 257.7 210 64.8
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-66 257.3 189 70.4
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-66 257.3 188 70.2
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.4e-66 256.9 203 65.0
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 1.4e-66 256.9 210 64.3
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.9e-66 256.5 188 70.2
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.4e-66 256.1 190 69.5
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.2e-66 255.8 201 65.7
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 3.2e-66 255.8 217 61.8
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 4.2e-66 255.4 201 64.7
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 5.4e-66 255.0 219 62.6
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 5.4e-66 255.0 203 67.0
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 9.3e-66 254.2 203 66.0
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 1.2e-65 253.8 254 55.9
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.2e-65 253.8 200 67.0
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.2e-65 253.8 200 67.0
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 2.7e-65 252.7 203 65.0
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 2.7e-65 252.7 198 65.2
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 4.6e-65 251.9 196 65.8
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 4.6e-65 251.9 211 63.0
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.0e-64 250.8 200 66.5
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.3e-64 250.4 203 64.0
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 1.7e-64 250.0 231 59.3
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 1.7e-64 250.0 219 58.9
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 5.1e-64 248.4 203 64.0
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 6.6e-64 248.1 222 60.4
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 5.6e-63 245.0 198 61.6
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 9.6e-63 244.2 199 64.8
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.3e-62 243.8 199 64.3
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 6.2e-62 241.5 210 59.5
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 8.1e-62 241.1 239 56.9
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.1e-62 241.1 173 72.3
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.0e-60 236.5 199 60.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.0e-60 236.5 189 67.7
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 5.8e-60 235.0 216 56.5
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 5.8e-60 235.0 203 57.6
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.4e-58 230.3 239 52.7
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.4e-58 230.3 215 55.3
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.2e-58 229.2 200 58.0
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-57 227.3 188 65.4
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 4.6e-57 225.3 159 74.8
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.4e-53 213.0 203 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 3.1e-53 212.6 205 50.2
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 5.3e-53 211.8 202 56.4
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 6.9e-53 211.5 203 56.7
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 9.0e-53 211.1 200 53.0
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 2.6e-52 209.5 211 54.5
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.6e-52 209.5 203 56.2
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 4.9e-51 205.3 180 58.3
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 4.2e-50 202.2 200 52.0
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 7.4e-47 191.4 136 75.7
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 2.2e-43 179.9 212 43.4
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 2.3e-40 169.9 210 49.0
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 1.1e-39 167.5 129 69.0
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.3e-30 137.5 178 47.8
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 2.8e-30 136.3 137 56.2
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 7.7e-28 128.3 85 76.5
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 1.4e-26 124.0 97 62.9
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 1.4e-26 124.0 97 62.9
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 3.2e-26 122.9 85 71.8
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 1.6e-25 120.6 93 68.8
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 1.5e-23 114.0 75 74.7
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 1.4e-18 97.4 83 56.6
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.2e-17 94.4 83 61.4
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 2.1e-17 93.6 113 50.4
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 5.3e-13 79.0 66 53.0
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 3.5e-12 76.3 66 51.5
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 1.3e-11 74.3 71 50.7
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 6.5e-11 72.0 66 51.5
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.5e-10 70.9 74 44.6
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.7e-09 66.6 58 56.9
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 6.1e-09 65.5 99 40.4


User provided reference genes

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