Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0366 Ceratophyllum demersum HOM05D003720 ORTHO05D017820 2.9e-76 288.5 147 100.0
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 2.4e-75 285.4 147 98.6
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 2.0e-69 265.8 145 90.3
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 1.0e-68 263.5 145 89.7
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 1.7e-68 262.7 145 89.0
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 2.2e-68 262.3 145 89.0
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 2.2e-68 262.3 145 89.0
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 2.2e-68 262.3 145 89.7
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 2.2e-68 262.3 145 89.7
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 2.9e-68 261.9 146 87.7
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 3.8e-68 261.5 145 89.0
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 4.9e-68 261.2 145 89.0
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 4.9e-68 261.2 145 89.0
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 4.9e-68 261.2 145 88.3
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 6.5e-68 260.8 145 88.3
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 6.5e-68 260.8 145 88.3
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 6.5e-68 260.8 145 88.3
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 8.4e-68 260.4 145 87.6
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.1e-67 260.0 146 87.7
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 1.1e-67 260.0 145 88.3
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 1.4e-67 259.6 144 88.2
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 1.4e-67 259.6 146 87.0
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 1.9e-67 259.2 145 88.3
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 1.9e-67 259.2 145 87.6
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 2.5e-67 258.8 144 88.9
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 2.5e-67 258.8 145 86.9
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 4.2e-67 258.1 145 86.9
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 5.5e-67 257.7 145 86.9
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 7.1e-67 257.3 146 86.3
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 7.1e-67 257.3 145 86.2
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 7.1e-67 257.3 144 88.2
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 9.3e-67 256.9 145 86.9
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 9.3e-67 256.9 145 86.9
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 1.2e-66 256.5 145 86.2
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.2e-66 256.5 145 86.2
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.2e-66 256.5 145 86.2
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.6e-66 256.1 145 86.9
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 1.6e-66 256.1 145 86.9
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 1.6e-66 256.1 145 86.2
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 1.6e-66 256.1 147 87.8
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.6e-66 256.1 144 86.8
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 1.6e-66 256.1 145 86.2
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 1.6e-66 256.1 147 87.8
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 2.1e-66 255.8 147 87.8
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 2.7e-66 255.4 146 86.3
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.7e-66 255.4 145 85.5
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.7e-66 255.4 146 85.6
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.7e-66 255.4 146 85.6
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 3.5e-66 255.0 145 85.5
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 3.5e-66 255.0 147 87.1
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 3.5e-66 255.0 145 86.2
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 3.5e-66 255.0 145 86.2
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 3.5e-66 255.0 145 86.2
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 3.5e-66 255.0 145 86.2
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 4.6e-66 254.6 145 84.1
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 6.0e-66 254.2 145 86.2
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 6.0e-66 254.2 145 84.8
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 6.0e-66 254.2 145 85.5
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 6.0e-66 254.2 145 86.2
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 1.0e-65 253.4 146 87.0
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 1.0e-65 253.4 146 87.0
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 1.0e-65 253.4 146 87.0
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.0e-65 253.4 145 87.6
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 1.0e-65 253.4 146 87.0
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 1.0e-65 253.4 145 86.2
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 1.8e-65 252.7 146 87.0
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 1.8e-65 252.7 146 85.6
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.3e-65 252.3 146 84.9
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 3.0e-65 251.9 145 86.2
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 3.0e-65 251.9 143 86.7
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 5.1e-65 251.1 145 86.9
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 8.7e-65 250.4 145 84.1
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 8.7e-65 250.4 145 84.1
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 8.7e-65 250.4 145 86.2
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.5e-64 249.6 146 84.2
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 1.5e-64 249.6 145 83.4
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 1.9e-64 249.2 144 86.1
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.5e-64 248.8 144 86.8
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 2.5e-64 248.8 144 85.4
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 7.4e-64 247.3 144 86.1
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 7.4e-64 247.3 145 83.4
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 9.7e-64 246.9 145 84.8
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 9.7e-64 246.9 144 86.1
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 1.6e-63 246.1 146 85.6
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 2.2e-63 245.7 145 84.8
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 4.8e-63 244.6 145 80.7
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 4.8e-63 244.6 145 84.8
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 8.2e-63 243.8 145 83.4
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 4.1e-62 241.5 158 77.2
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 6.9e-62 240.7 145 82.1
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 1.5e-61 239.6 145 82.1
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 2.0e-61 239.2 145 82.1
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 5.9e-61 237.7 145 81.4
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 5.9e-61 237.7 145 81.4
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 5.9e-61 237.7 145 81.4
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 7.6e-61 237.3 144 80.6
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 1.3e-60 236.5 145 80.7
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.3e-60 236.5 146 80.8
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 1.3e-60 236.5 182 69.2
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 1.7e-60 236.1 180 71.1
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 8.5e-60 233.8 141 80.1
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 1.1e-59 233.4 130 86.9
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 2.5e-59 232.3 146 80.1
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 2.5e-59 232.3 146 80.1
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 7.9e-58 227.3 146 79.5
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 3.0e-57 225.3 144 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 4.3e-56 221.5 144 75.7
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 1.3e-55 219.9 154 75.3
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 1.3e-52 209.9 122 84.4
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 3.3e-48 195.3 144 68.8
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 2.7e-34 149.1 79 92.4
Peaxi162Scf00256g00812 Petunia axillaris HOM05D003720 ORTHO05D017820 8.0e-34 147.5 84 82.1
Nitab4.5_0002116g0030 Nicotiana tabacum HOM05D003720 ORTHO05D005312 4.0e-33 145.2 78 92.3
unitig_22.g6633 Utricularia gibba HOM05D003720 ORTHO05D017820 7.0e-30 134.4 84 75.0
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 4.0e-25 118.6 68 80.9
Nitab4.5_0002116g0020 Nicotiana tabacum HOM05D003720 ORTHO05D017820 1.2e-24 117.1 69 78.3
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 3.6e-18 95.5 151 39.1
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 2.0e-16 89.7 133 41.4
TAR374G0606 Trochodendron aralioides HOM05D003720 ORTHO05D017820 2.0e-13 79.7 47 80.9
Dinv41561 Davidia involucrata HOM05D003720 ORTHO05D017820 4.5e-13 78.6 54 64.8
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 7.3e-11 71.2 37 94.6
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 1.2e-10 70.5 36 97.2
Lsat_1_v5_gn_7_20540 Lactuca sativa HOM05D003720 ORTHO05D007744 4.4e-08 62.0 37 86.5
Lsat_1_v5_gn_1_94860 Lactuca sativa HOM05D003720 ORTHO05D017820 1.7e-07 60.1 36 86.1
FvH4_5g24770 Fragaria vesca HOM05D067251 ORTHO05D017820 7.0e-06 54.7 75 48.0


User provided reference genes

Program Settings