Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0338 Ceratophyllum demersum HOM05D002934 ORTHO05D024932 1.3e-76 289.7 143 100.0
CDE06G0641 Ceratophyllum demersum HOM05D002934 ORTHO05D003937 2.9e-57 225.3 111 98.2
Peaxi162Scf00359g01222 Petunia axillaris HOM05D002934 ORTHO05D003937 9.7e-53 210.3 111 89.2
Actinidia07503 Actinidia chinensis HOM05D002934 ORTHO05D003937 2.2e-52 209.1 111 91.0
Actinidia12530 Actinidia chinensis HOM05D002934 ORTHO05D003937 2.8e-52 208.8 111 91.0
Os01g0817700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 3.7e-52 208.4 111 89.2
ATR1127G201 Amborella trichopoda HOM05D002934 ORTHO05D003937 6.3e-52 207.6 111 88.3
TWI74G1089 Tripterygium wilfordii HOM05D002934 ORTHO05D003937 6.3e-52 207.6 111 87.4
CAN.G212.1 Capsicum annuum HOM05D002934 ORTHO05D003937 8.2e-52 207.2 111 87.4
HPP92_028104 Vanilla planifolia HOM05D002934 ORTHO05D003937 8.2e-52 207.2 111 88.3
PGR031G1733 Punica granatum HOM05D002934 ORTHO05D003937 1.1e-51 206.8 111 90.1
Gohir.A02G092100 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.8e-51 206.1 111 87.4
Gohir.D02G108700 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.8e-51 206.1 111 87.4
Gorai.005G125000 Gossypium raimondii HOM05D002934 ORTHO05D003937 1.8e-51 206.1 111 87.4
TAR369G0645 Trochodendron aralioides HOM05D002934 ORTHO05D003937 1.8e-51 206.1 111 88.3
vmacro08741 Vaccinium macrocarpon HOM05D002934 ORTHO05D003937 1.8e-51 206.1 111 89.2
Nitab4.5_0006644g0030 Nicotiana tabacum HOM05D002934 ORTHO05D003937 2.4e-51 205.7 111 86.5
Cfa016986 Carpinus fangiana HOM05D002934 ORTHO05D003937 3.1e-51 205.3 111 88.3
Oeu051396.1 Olea europaea HOM05D002934 ORTHO05D003937 3.1e-51 205.3 111 87.4
Sc02g0000080 Simmondsia chinensis HOM05D002934 ORTHO05D003937 3.1e-51 205.3 111 88.3
Hund14946 Selenicereus undatus HOM05D002934 ORTHO05D003937 4.1e-51 204.9 112 87.5
Gohir.D02G010600 Gossypium hirsutum HOM05D002934 ORTHO05D003937 5.3e-51 204.5 111 88.3
Gorai.005G012900 Gossypium raimondii HOM05D002934 ORTHO05D003937 5.3e-51 204.5 111 88.3
Lj1C638T10 Lonicera japonica HOM05D002934 ORTHO05D003937 5.3e-51 204.5 111 88.3
Rhsim12G0013400 Rhododendron simsii HOM05D002934 ORTHO05D003937 5.3e-51 204.5 111 88.3
Nitab4.5_0008321g0010 Nicotiana tabacum HOM05D002934 ORTHO05D003937 7.0e-51 204.1 111 85.6
Sc20g0007380 Simmondsia chinensis HOM05D002934 ORTHO05D003937 7.0e-51 204.1 111 86.5
Duzib212G0650 Durio zibethinus HOM05D002934 ORTHO05D003937 1.2e-50 203.4 111 87.4
Gohir.A02G010300 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.2e-50 203.4 111 87.4
Sc20g0007500 Simmondsia chinensis HOM05D002934 ORTHO05D003937 1.2e-50 203.4 111 86.5
TAR633G1746 Trochodendron aralioides HOM05D002934 ORTHO05D003937 1.2e-50 203.4 111 86.5
Atru.chr8.38 Acer truncatum HOM05D002934 ORTHO05D003937 1.6e-50 203.0 111 86.5
Aqoxy4G01987 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 1.6e-50 203.0 111 86.5
MSTRG.14890 Avicennia marina HOM05D002934 ORTHO05D003937 1.6e-50 203.0 111 87.4
CSS0023901 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 2.0e-50 202.6 112 87.5
CSS0033821 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 2.0e-50 202.6 112 87.5
Glyma.18G219100 Glycine max HOM05D002934 ORTHO05D003937 2.0e-50 202.6 111 87.4
Gohir.D10G125400 Gossypium hirsutum HOM05D002934 ORTHO05D003937 2.0e-50 202.6 111 86.5
Gorai.011G138400 Gossypium raimondii HOM05D002934 ORTHO05D003937 2.0e-50 202.6 111 86.5
Hma1.2p1_1020F.1_g248460 Hydrangea macrophylla HOM05D002934 ORTHO05D003937 2.0e-50 202.6 111 86.5
Oeu003104.3 Olea europaea HOM05D002934 ORTHO05D003937 2.0e-50 202.6 111 87.4
PGSC0003DMG400000935 Solanum tuberosum HOM05D002934 ORTHO05D003937 2.0e-50 202.6 114 83.3
SGA_v2.0_scaffold181G39723 Striga asiatica HOM05D002934 ORTHO05D003937 2.0e-50 202.6 112 87.5
SGA_v2.0_scaffold181G39730 Striga asiatica HOM05D002934 ORTHO05D003937 2.0e-50 202.6 112 87.5
QL07p030511 Quercus lobata HOM05D002934 ORTHO05D003937 2.7e-50 202.2 111 87.4
QL07p031542 Quercus lobata HOM05D002934 ORTHO05D003937 2.7e-50 202.2 111 87.4
Aqoxy2G00661 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 3.5e-50 201.8 111 85.6
Eucgr.K01314 Eucalyptus grandis HOM05D002934 ORTHO05D003937 3.5e-50 201.8 111 82.9
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 4.5e-50 201.4 112 84.8
Migut.H01273 Erythranthe guttata HOM05D002934 ORTHO05D003937 4.5e-50 201.4 111 86.5
Solyc07g044840.3 Solanum lycopersicum HOM05D002934 ORTHO05D003937 5.9e-50 201.1 111 85.6
Sopen07g023400 Solanum pennellii HOM05D002934 ORTHO05D003937 5.9e-50 201.1 111 85.6
MBI15_g05581_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 7.7e-50 200.7 111 86.5
Psat1g024760 Pisum sativum HOM05D002934 ORTHO05D003937 7.7e-50 200.7 111 86.5
PGR004G0010 Punica granatum HOM05D002934 ORTHO05D003937 7.7e-50 200.7 111 83.8
Thecc.04G170500 Theobroma cacao HOM05D002934 ORTHO05D003937 7.7e-50 200.7 111 84.7
GSVIVG01029842001 Vitis vinifera HOM05D002934 ORTHO05D003937 7.7e-50 200.7 111 84.7
Sed0001902 Sechium edule HOM05D002934 ORTHO05D003937 1.0e-49 200.3 111 86.5
SGA_v2.0_scaffold159G37538 Striga asiatica HOM05D002934 ORTHO05D003937 1.0e-49 200.3 111 85.6
ClCG04G005090 Citrullus lanatus HOM05D002934 ORTHO05D003937 1.7e-49 199.5 111 85.6
Manes.09G120000 Manihot esculenta HOM05D002934 ORTHO05D003937 1.7e-49 199.5 111 84.7
HPP92_022876 Vanilla planifolia HOM05D002934 ORTHO05D003937 1.7e-49 199.5 111 82.9
PSO339G4103 Papaver somniferum HOM05D002934 ORTHO05D003937 2.2e-49 199.1 111 85.6
PSO384G1474 Papaver somniferum HOM05D002934 ORTHO05D003937 2.2e-49 199.1 111 85.6
THA.LOC104799818 Tarenaya hassleriana HOM05D002934 ORTHO05D003937 2.2e-49 199.1 111 85.6
Zm00001eb149730 Zea mays HOM05D002934 ORTHO05D003937 2.2e-49 199.1 112 83.9
Zm00001eb368990 Zea mays HOM05D002934 ORTHO05D003937 2.2e-49 199.1 112 83.9
Cpa.g.sc9.169 Carica papaya HOM05D002934 ORTHO05D003937 2.9e-49 198.7 111 83.8
Ca_07804_v3 Cicer arietinum L. HOM05D002934 ORTHO05D003937 3.8e-49 198.4 111 85.6
HanXRQChr10g0286701 Helianthus annuus HOM05D002934 ORTHO05D003937 3.8e-49 198.4 111 85.6
RcHm_v2.0_Chr3g0459381 Rosa chinensis HOM05D002934 ORTHO05D003937 3.8e-49 198.4 111 85.6
Actinidia11471 Actinidia chinensis HOM05D002934 ORTHO05D003937 5.0e-49 198.0 116 82.8
CsaV3_4G013550 Cucumis sativus L. HOM05D002934 ORTHO05D003937 5.0e-49 198.0 111 84.7
Dinv20232 Davidia involucrata HOM05D002934 ORTHO05D003937 5.0e-49 198.0 114 86.0
Duzib151G0059 Durio zibethinus HOM05D002934 ORTHO05D003937 5.0e-49 198.0 111 84.7
Eucgr.A00868 Eucalyptus grandis HOM05D002934 ORTHO05D003937 5.0e-49 198.0 111 84.7
Medtr7g074570 Medicago truncatula HOM05D002934 ORTHO05D003937 5.0e-49 198.0 111 84.7
TPR.G3169 Trifolium pratense HOM05D002934 ORTHO05D003937 5.0e-49 198.0 111 84.7
COL.COLO4_15321 Corchorus olitorius HOM05D002934 ORTHO05D003937 6.5e-49 197.6 111 84.7
COL.COLO4_21259 Corchorus olitorius HOM05D002934 ORTHO05D003937 6.5e-49 197.6 111 84.7
MD04G1180100 Malus domestica HOM05D002934 ORTHO05D003937 6.5e-49 197.6 112 84.8
EL10Ac1g00002 Beta vulgaris HOM05D002934 ORTHO05D003937 8.5e-49 197.2 112 82.1
CiPaw.10G167100 Carya illinoinensis HOM05D002934 ORTHO05D003937 8.5e-49 197.2 111 84.7
FAN02G1856 Fragaria x ananassa HOM05D002934 ORTHO05D003937 1.1e-48 196.8 111 84.7
HanXRQChr11g0329261 Helianthus annuus HOM05D002934 ORTHO05D003937 1.1e-48 196.8 111 84.7
Potri.016G142900 Populus trichocarpa HOM05D002934 ORTHO05D003937 1.1e-48 196.8 111 83.8
unitig_52.g17320 Utricularia gibba HOM05D002934 ORTHO05D003937 1.1e-48 196.8 111 83.8
EL10Ac7g17147 Beta vulgaris HOM05D002934 ORTHO05D003937 1.5e-48 196.4 112 81.2
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 1.5e-48 196.4 110 83.6
Lj3g0015503 Lotus japonicus HOM05D002934 ORTHO05D003937 1.9e-48 196.1 111 82.9
Potri.006G113300 Populus trichocarpa HOM05D002934 ORTHO05D003937 1.9e-48 196.1 111 83.8
Ciclev10011402m.g Citrus clementina HOM05D002934 ORTHO05D003937 2.5e-48 195.7 111 85.6
FvH4_6g09180 Fragaria vesca HOM05D002934 ORTHO05D003937 2.5e-48 195.7 111 84.7
FAN09G0756 Fragaria x ananassa HOM05D002934 ORTHO05D003937 2.5e-48 195.7 111 84.7
FAN14G3266 Fragaria x ananassa HOM05D002934 ORTHO05D003937 2.5e-48 195.7 111 84.7
VMungo1383G2740 Vigna mungo HOM05D002934 ORTHO05D003937 2.5e-48 195.7 111 84.7
arahy.Tifrunner.gnm1.ann1.6MS3W4 Arachis hypogaea HOM05D002934 ORTHO05D003937 3.2e-48 195.3 111 85.6
arahy.Tifrunner.gnm1.ann1.TG142F Arachis hypogaea HOM05D002934 ORTHO05D003937 3.2e-48 195.3 111 85.6
Cc05_g00860 Coffea canephora HOM05D002934 ORTHO05D003937 3.2e-48 195.3 111 83.8
ECA248G1862 Erigeron canadensis HOM05D002934 ORTHO05D003937 3.2e-48 195.3 112 83.9
Os05g0482700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 3.2e-48 195.3 112 81.2
Phvul.008G077900 Phaseolus vulgaris HOM05D002934 ORTHO05D003937 3.2e-48 195.3 111 85.6
SEGI_06068 Sequoiadendron giganteum HOM05D002934 ORTHO05D003937 3.2e-48 195.3 111 82.0
Lj1g0025652 Lotus japonicus HOM05D002934 ORTHO05D003937 4.2e-48 194.9 111 83.8
Prupe.6G300000 Prunus persica HOM05D002934 ORTHO05D003937 4.2e-48 194.9 111 84.7
DCAR_023040 Daucus carota HOM05D002934 ORTHO05D003937 5.5e-48 194.5 111 83.8
ECA247G2872 Erigeron canadensis HOM05D002934 ORTHO05D003937 5.5e-48 194.5 112 83.0
Glyma.09G270500 Glycine max HOM05D002934 ORTHO05D003937 5.5e-48 194.5 111 84.7
Gohir.A10G141450 Gossypium hirsutum HOM05D002934 ORTHO05D003937 5.5e-48 194.5 111 83.8
Hund20698 Selenicereus undatus HOM05D002934 ORTHO05D003937 5.5e-48 194.5 111 82.9
Lsat_1_v5_gn_9_40081 Lactuca sativa HOM05D002934 ORTHO05D003937 7.2e-48 194.1 112 82.1
HanXRQChr15g0464621 Helianthus annuus HOM05D002934 ORTHO05D003937 9.4e-48 193.7 111 83.8
MD12G1195300 Malus domestica HOM05D002934 ORTHO05D003937 9.4e-48 193.7 111 83.8
Sabra04G0158900 Salix brachista HOM05D002934 ORTHO05D003937 9.4e-48 193.7 111 82.0
Os03g0330200 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 2.1e-47 192.6 111 78.4
Sabra06G0088200 Salix brachista HOM05D002934 ORTHO05D003937 2.1e-47 192.6 111 82.0
Ah.03g138170 Amaranthus hybridus HOM05D002934 ORTHO05D003937 2.7e-47 192.2 105 85.7
AUR62006462 Chenopodium quinoa HOM05D002934 ORTHO05D003937 2.7e-47 192.2 111 80.2
HanXRQChr01g0000311 Helianthus annuus HOM05D002934 ORTHO05D003937 2.7e-47 192.2 111 84.7
Lsat_1_v5_gn_8_108400 Lactuca sativa HOM05D002934 ORTHO05D003937 2.7e-47 192.2 112 83.0
Lj2C54T9 Lonicera japonica HOM05D002934 ORTHO05D003937 3.6e-47 191.8 112 80.4
unitig_62.g23250 Utricularia gibba HOM05D002934 ORTHO05D003937 3.6e-47 191.8 111 81.1
CARHR009750 Cardamine hirsuta HOM05D002934 ORTHO05D003937 4.7e-47 191.4 111 81.1
AUR62029818 Chenopodium quinoa HOM05D002934 ORTHO05D003937 4.7e-47 191.4 111 80.2
Manes.08G166700 Manihot esculenta HOM05D002934 ORTHO05D003937 1.4e-46 189.9 111 82.0
BcaC05g29595 Brassica carinata HOM05D002934 ORTHO05D003937 5.2e-46 188.0 111 79.3
Sp3g07040 Schrenkiella parvula HOM05D002934 ORTHO05D003937 5.2e-46 188.0 111 80.2
Carub.0001s0912 Capsella rubella HOM05D002934 ORTHO05D003937 8.8e-46 187.2 111 80.2
Thhalv10007256m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 8.8e-46 187.2 111 79.3
Aa31LG1G5200 Aethionema arabicum HOM05D002934 ORTHO05D003937 1.2e-45 186.8 111 80.2
Carub.0003s0772 Capsella rubella HOM05D002934 ORTHO05D003937 1.2e-45 186.8 111 79.3
CARHR082890 Cardamine hirsuta HOM05D002934 ORTHO05D003937 1.2e-45 186.8 111 78.4
AT1G09780 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 1.5e-45 186.4 111 79.3
A08p34340 Brassica napus HOM05D002934 ORTHO05D003937 1.5e-45 186.4 111 79.3
C08p13190 Brassica napus HOM05D002934 ORTHO05D003937 1.5e-45 186.4 111 79.3
BolC8t48948H Brassica oleracea HOM05D002934 ORTHO05D003937 1.5e-45 186.4 111 79.3
BraA08t35346Z Brassica rapa HOM05D002934 ORTHO05D003937 1.5e-45 186.4 111 79.3
Haze_21221 Corylus avellana HOM05D002934 ORTHO05D003937 2.0e-45 186.0 145 66.9
MELO3C025275.2 Cucumis melo HOM05D002934 ORTHO05D003937 2.0e-45 186.0 105 83.8
Lalb_Chr13g0290291 Lupinus albus HOM05D002934 ORTHO05D003937 2.0e-45 186.0 111 80.2
AL1G20330 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 2.6e-45 185.7 111 79.3
AL3G19560 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 2.6e-45 185.7 111 78.4
Sp1g08370 Schrenkiella parvula HOM05D002934 ORTHO05D003937 2.6e-45 185.7 111 78.4
SMO147G0367 Selaginella moellendorffii HOM05D002934 ORTHO05D003937 2.6e-45 185.7 111 79.3
AT3G08590 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 3.4e-45 185.3 111 78.4
A05p40190 Brassica napus HOM05D002934 ORTHO05D003937 3.4e-45 185.3 111 78.4
CSS0038234 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 3.4e-45 185.3 115 80.9
C05p59270 Brassica napus HOM05D002934 ORTHO05D003937 4.4e-45 184.9 111 78.4
BolC5t34570H Brassica oleracea HOM05D002934 ORTHO05D003937 4.4e-45 184.9 111 78.4
Thhalv10020418m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 4.4e-45 184.9 111 78.4
Oeu033549.1 Olea europaea HOM05D002934 ORTHO05D003937 5.7e-45 184.5 120 75.8
DCAR_013327 Daucus carota HOM05D002934 ORTHO05D003937 7.5e-45 184.1 106 81.1
Aa31LG1G5210 Aethionema arabicum HOM05D002934 ORTHO05D003937 2.2e-44 182.6 111 77.5
Thecc.10G133200 Theobroma cacao HOM05D002934 ORTHO05D024932 4.8e-44 181.4 106 82.1
Mapoly0085s0094 Marchantia polymorpha HOM05D002934 ORTHO05D003937 4.1e-43 178.3 111 75.7
Pp3c17_2760 Physcomitrium patens HOM05D002934 ORTHO05D003937 2.0e-42 176.0 121 70.2
Pp3c17_2761 Physcomitrium patens HOM05D002934 ORTHO05D003937 2.0e-42 176.0 121 70.2
Rhsim05G0234700 Rhododendron simsii HOM05D002934 ORTHO05D003937 7.7e-42 174.1 171 55.0
AagrBONN_evm.TU.Sc2ySwM_228.3737 Anthoceros agrestis HOM05D002934 ORTHO05D003937 1.0e-41 173.7 112 73.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.0e-41 173.7 102 81.4
Pp3c10_15340 Physcomitrium patens HOM05D002934 ORTHO05D003937 3.8e-41 171.8 111 72.1
CBR_g5674 Chara braunii HOM05D002934 ORTHO05D003937 7.5e-37 157.5 113 65.5
CBR_g5676 Chara braunii HOM05D002934 ORTHO05D003937 2.8e-36 155.6 113 64.6
AagrBONN_evm.TU.Sc2ySwM_117.2425 Anthoceros agrestis HOM05D002934 ORTHO05D003937 1.8e-35 152.9 111 64.9
CBR_g36655 Chara braunii HOM05D002934 ORTHO05D003937 9.2e-35 150.6 114 64.0
Pp3c25_670 Physcomitrium patens HOM05D002934 ORTHO05D003937 2.0e-34 149.4 110 62.7
Mapoly0014s0209 Marchantia polymorpha HOM05D002934 ORTHO05D003937 1.9e-32 142.9 112 59.8
Sc15g0001940 Simmondsia chinensis HOM05D002934 ORTHO05D024932 1.9e-32 142.9 86 75.6
Cre06.g272050 Chlamydomonas reinhardtii HOM05D002934 ORTHO05D003937 5.8e-29 131.3 101 60.4
MCO07G232 Micromonas commoda HOM05D002934 ORTHO05D003937 5.8e-29 131.3 111 60.4
Sc04g0003660 Simmondsia chinensis HOM05D002934 ORTHO05D024932 2.4e-27 125.9 84 69.0
Pp3c3_440 Physcomitrium patens HOM05D002934 ORTHO05D003937 6.6e-25 117.9 103 55.3
Zm00001eb281930 Zea mays HOM05D002934 ORTHO05D003937 1.5e-24 116.7 81 72.8
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 4.3e-24 115.2 78 75.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 4.3e-24 115.2 78 75.6
Dinv16924 Davidia involucrata HOM05D002934 ORTHO05D003937 1.4e-19 100.1 60 75.0
Actinidia22461 Actinidia chinensis HOM05D002934 ORTHO05D003937 1.6e-18 96.7 115 49.6
Thecc.04G001100 Theobroma cacao HOM05D002934 ORTHO05D030838 4.6e-18 95.1 50 86.0
Thhalv10015179m.g Eutrema salsugineum HOM05D002934 ORTHO05D024932 1.9e-16 89.7 55 76.4
Hund10888 Selenicereus undatus HOM05D002934 ORTHO05D003937 3.6e-15 85.5 103 48.5
Nn5g26748 Nelumbo nucifera HOM05D002934 ORTHO05D003937 2.4e-11 72.8 85 51.8
Eucgr.A00869 Eucalyptus grandis HOM05D002934 ORTHO05D003937 1.2e-10 70.5 40 82.5
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 4.3e-08 62.0 45 62.2


User provided reference genes

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