Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 9.7e-261 902.9 438 100.0
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.8e-157 558.1 432 68.5
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.9e-152 543.1 443 59.4
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.0e-150 535.4 444 57.4
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.0e-149 533.1 443 58.7
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.0e-145 519.2 443 57.6
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 9.7e-144 514.2 440 58.0
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.6e-143 513.5 444 55.9
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.6e-143 513.5 443 55.8
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 3.7e-143 512.3 440 55.9
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 4.8e-143 511.9 440 55.9
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.4e-142 510.4 444 55.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 3.1e-142 509.2 442 55.4
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 2.6e-141 506.1 444 56.5
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 4.5e-141 505.4 443 55.1
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 5.9e-141 505.0 444 55.6
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.2e-140 503.1 444 54.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.0e-140 501.9 442 55.9
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.2e-139 499.2 444 53.4
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 4.2e-139 498.8 443 54.6
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 5.5e-139 498.4 444 54.3
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 7.2e-139 498.0 444 55.9
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.7e-138 496.1 444 53.8
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 3.6e-138 495.7 442 54.1
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 6.1e-138 495.0 428 56.5
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.0e-137 494.2 441 54.4
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 8.8e-137 491.1 444 52.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.5e-136 489.6 444 54.3
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 7.4e-136 488.0 444 52.7
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 9.7e-136 487.6 446 54.3
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 2.8e-135 486.1 444 52.5
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.8e-135 486.1 444 53.4
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 2.8e-135 486.1 474 51.7
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 2.8e-135 486.1 444 52.7
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.4e-134 483.8 444 54.3
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 1.8e-134 483.4 444 53.2
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 4.1e-134 482.3 443 54.2
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 6.9e-134 481.5 442 54.1
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.2e-133 480.7 442 52.5
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.2e-133 480.7 444 52.0
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.5e-133 480.3 442 52.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.6e-133 479.6 446 54.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 3.4e-133 479.2 446 54.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 7.7e-133 478.0 443 52.8
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 7.7e-133 478.0 456 50.9
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.0e-132 477.6 442 53.6
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.3e-132 477.2 444 52.0
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.7e-132 476.9 444 53.2
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.8e-132 475.7 444 53.4
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 8.5e-132 474.6 445 53.5
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.1e-131 474.2 444 51.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.1e-131 474.2 444 51.6
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.4e-131 473.8 442 52.0
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.2e-131 472.6 446 52.5
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 5.5e-131 471.9 444 52.3
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 7.2e-131 471.5 443 52.6
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 7.2e-131 471.5 444 51.6
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 9.4e-131 471.1 443 52.6
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.1e-130 469.9 443 52.8
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.0e-129 467.6 445 52.6
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.3e-129 466.5 443 52.6
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 3.0e-129 466.1 446 52.2
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 3.9e-129 465.7 444 52.3
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.9e-129 465.7 442 52.7
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.5e-128 463.8 442 51.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 2.2e-127 459.9 440 51.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.2e-127 459.9 440 52.5
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.2e-127 459.9 442 50.5
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.8e-127 459.5 442 50.2
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.1e-126 457.6 447 51.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 9.1e-126 454.5 489 47.9
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 2.6e-125 453.0 459 50.8
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.0e-124 451.1 443 48.8
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.3e-124 450.7 443 49.9
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.2e-124 449.9 444 50.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.5e-124 448.4 440 50.9
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 8.5e-124 448.0 418 52.6
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.5e-123 447.2 418 52.4
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 3.2e-123 446.0 439 50.6
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.2e-123 445.7 440 49.3
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 6.1e-122 441.8 443 49.0
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 6.1e-122 441.8 443 49.0
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.0e-121 439.5 443 50.6
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.9e-121 439.1 440 48.9
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.9e-121 439.1 440 48.9
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 5.2e-121 438.7 444 50.2
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 5.2e-121 438.7 462 48.7
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 7.4e-120 434.9 443 49.2
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.3e-119 431.8 418 51.4
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 4.1e-118 429.1 365 58.1
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.6e-117 427.2 443 49.4
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 5.9e-117 425.2 383 55.4
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.9e-116 422.9 400 52.5
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.9e-116 422.9 457 47.7
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.2e-114 417.5 380 55.0
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.6e-114 417.2 443 49.4
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 2.7e-114 416.4 439 48.3
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-113 414.1 365 54.8
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.4e-112 409.5 438 49.5
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 7.5e-112 408.3 441 46.9
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 6.3e-111 405.2 384 50.8
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.2e-109 401.0 381 53.0
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 7.7e-109 398.3 439 46.7
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.8e-108 396.0 385 51.4
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.0e-105 386.0 415 49.2
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.7e-104 382.1 364 54.1
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 5.9e-101 372.1 443 43.6
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 5.9e-101 372.1 443 43.6
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 5.9e-101 372.1 443 43.6
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.0e-97 359.8 438 43.2
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 2.6e-96 356.7 440 42.0
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.4e-94 350.1 415 44.8
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.7e-92 344.0 440 41.6
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.9e-92 342.8 314 53.5
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.9e-91 340.5 424 41.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.0e-89 334.7 446 40.6
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 8.3e-87 325.1 443 41.5
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.5e-80 304.3 310 50.6
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.5e-80 304.3 307 51.5
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.1e-78 298.1 444 39.9
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 3.2e-78 296.6 443 39.7
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 8.9e-73 278.5 229 58.1
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 4.9e-71 272.7 366 41.5
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 4.3e-67 259.6 444 36.7
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 5.6e-67 259.2 244 51.2
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 3.4e-64 250.0 517 31.9
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 5.4e-62 242.7 380 38.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 9.3e-62 241.9 184 59.8
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.4e-55 219.2 231 51.5
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 2.1e-53 214.2 480 31.9
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 6.6e-52 209.1 309 42.4
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.3e-47 194.9 164 54.9
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 3.4e-40 170.2 144 55.6
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 5.5e-38 162.9 150 49.3
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.9e-27 127.9 476 26.1
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.9e-23 114.0 102 50.0
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 7.9e-21 105.9 118 47.5
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.2e-16 92.0 92 54.3
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 5.9e-16 89.7 72 52.8
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.0e-15 89.0 353 26.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.4e-09 68.6 72 45.8
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.0e-08 64.7 117 30.8
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 2.9e-07 60.8 138 27.5
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 5.0e-07 60.1 174 28.7
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 6.5e-07 59.7 59 49.2
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.1e-06 58.9 147 29.3
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.9e-06 58.2 173 28.9
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.9e-06 58.2 136 28.7


User provided reference genes

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