Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 6.6e-66 253.8 123 100.0
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.7e-25 117.9 64 87.5
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.2e-24 115.9 63 87.3
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.7e-19 99.0 111 44.1
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.1e-19 97.8 63 73.0
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 7.9e-19 97.4 63 71.4
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 7.9e-19 97.4 63 69.8
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-18 96.7 63 71.4
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-18 96.7 63 71.4
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.4e-18 96.7 63 69.8
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.8e-18 96.3 63 69.8
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 2.3e-18 95.9 63 69.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.3e-18 95.9 63 69.8
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.0e-18 95.5 63 69.8
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.0e-18 95.5 63 69.8
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.0e-18 95.5 63 69.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 3.9e-18 95.1 115 46.1
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.1e-17 93.6 63 69.8
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 1.1e-17 93.6 63 69.8
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.5e-17 93.2 63 66.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.5e-17 93.2 63 68.3
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.5e-17 93.2 69 62.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.9e-17 92.8 63 68.3
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.9e-17 92.8 63 68.3
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.9e-17 92.8 63 66.7
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.9e-17 92.8 63 68.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.9e-17 92.8 63 68.3
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 68.3
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 66.7
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 68.3
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 66.7
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 66.7
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 68.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 68.3
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 66.7
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.5e-17 92.4 63 65.1
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.5e-17 92.4 115 44.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.3e-17 92.0 63 66.7
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.3e-17 92.0 63 69.8
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.3e-17 92.0 63 69.8
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 3.3e-17 92.0 63 68.3
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 3.3e-17 92.0 63 66.7
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 3.3e-17 92.0 63 68.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 68.3
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 68.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 66.7
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 66.7
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 66.7
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 66.7
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 66.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 68.3
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 4.3e-17 91.7 115 44.3
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.3e-17 91.7 63 68.3
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 5.7e-17 91.3 105 46.7
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 5.7e-17 91.3 63 69.8
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 5.7e-17 91.3 63 66.7
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 5.7e-17 91.3 63 68.3
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 5.7e-17 91.3 63 68.3
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.7e-17 91.3 63 68.3
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 7.4e-17 90.9 63 68.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.4e-17 90.9 63 65.1
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 7.4e-17 90.9 63 66.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 7.4e-17 90.9 63 68.3
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 7.4e-17 90.9 63 68.3
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 7.4e-17 90.9 63 65.1
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 9.7e-17 90.5 63 65.1
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 9.7e-17 90.5 111 44.1
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 9.7e-17 90.5 63 65.1
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.3e-16 90.1 63 66.7
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.3e-16 90.1 64 62.5
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.3e-16 90.1 63 65.1
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.7e-16 89.7 63 63.5
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.7e-16 89.7 63 65.1
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 2.2e-16 89.4 63 63.5
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.2e-16 89.4 63 65.1
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.2e-16 89.4 115 44.3
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.8e-16 89.0 63 65.1
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.8e-16 89.0 63 63.5
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.7e-16 88.6 63 68.3
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 3.7e-16 88.6 63 66.7
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 3.7e-16 88.6 63 66.7
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.8e-16 88.2 115 43.5
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.8e-16 88.2 115 43.5
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 4.8e-16 88.2 63 63.5
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.8e-16 88.2 63 63.5
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.3e-16 87.8 63 61.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 8.2e-16 87.4 63 63.5
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 8.2e-16 87.4 63 65.1
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 8.2e-16 87.4 64 65.6
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.2e-16 87.4 63 63.5
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.2e-16 87.4 63 61.9
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.1e-15 87.0 63 63.5
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.1e-15 87.0 63 65.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.4e-15 86.7 63 65.1
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.4e-15 86.7 63 68.3
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.8e-15 86.3 66 66.7
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 2.4e-15 85.9 63 68.3
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.4e-15 85.9 62 61.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.1e-15 85.5 90 53.3
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.1e-15 85.5 90 53.3
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.1e-15 85.5 64 67.2
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 4.1e-15 85.1 63 66.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 5.3e-15 84.7 90 52.2
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 5.3e-15 84.7 63 60.3
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 6.9e-15 84.3 63 63.5
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 6.9e-15 84.3 63 66.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 6.9e-15 84.3 64 65.6
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 6.9e-15 84.3 63 66.7
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 9.1e-15 84.0 63 68.3
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 9.1e-15 84.0 63 68.3
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.2e-14 83.6 65 64.6
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.2e-14 83.6 63 65.1
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.5e-14 83.2 63 65.1
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.5e-14 83.2 63 65.1
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.5e-14 83.2 63 65.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.5e-14 83.2 63 58.7
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.5e-14 83.2 63 61.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.5e-14 83.2 64 65.6
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 2.0e-14 82.8 63 65.1
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.4e-14 82.0 63 63.5
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.5e-14 81.6 63 65.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 4.5e-14 81.6 63 63.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 4.5e-14 81.6 63 63.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 4.5e-14 81.6 63 63.5
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.0e-13 80.5 63 65.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.0e-13 80.5 63 63.5
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 2.2e-13 79.3 63 61.9
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 2.2e-13 79.3 63 61.9
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 3.8e-13 78.6 63 63.5
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 5.0e-13 78.2 65 58.5
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 8.5e-13 77.4 63 61.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 9.4e-12 73.9 63 55.6
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 1.2e-11 73.6 38 97.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.7e-11 72.4 63 57.1
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.7e-11 72.4 115 40.0
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 3.6e-11 72.0 63 58.7
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 4.7e-11 71.6 53 62.3
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.0e-10 70.5 68 58.8
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.4e-10 70.1 63 57.1
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 1.8e-10 69.7 63 54.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.9e-10 68.6 63 55.6
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 9.7e-09 63.9 42 69.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-08 63.5 65 49.2
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 4.1e-07 58.5 94 38.3
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.6e-06 55.8 65 46.2


User provided reference genes

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