Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0252 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 1.8e-119 432.6 210 100.0
Manes.18G044800 Manihot esculenta HOM05D002570 ORTHO05D002689 2.0e-14 83.6 119 38.7
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 2.0e-14 83.6 117 35.0
Nn1g04609 Nelumbo nucifera HOM05D002570 ORTHO05D002689 2.6e-14 83.2 77 46.8
BcaC06g31719 Brassica carinata HOM05D002570 ORTHO05D002689 1.0e-13 81.3 77 45.5
BcaC06g34677 Brassica carinata HOM05D002570 ORTHO05D002689 2.2e-13 80.1 77 44.2
BolC7t43091H Brassica oleracea HOM05D002570 ORTHO05D002689 2.2e-13 80.1 77 44.2
TAR381G0312 Trochodendron aralioides HOM05D002570 ORTHO05D002689 2.2e-13 80.1 78 46.2
C07p25720 Brassica napus HOM05D002570 ORTHO05D002689 2.9e-13 79.7 77 42.9
GSVIVG01009363001 Vitis vinifera HOM05D002570 ORTHO05D002689 2.9e-13 79.7 90 40.0
TWI56G1429 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 5.0e-13 79.0 93 39.8
A06p48010 Brassica napus HOM05D002570 ORTHO05D002689 6.5e-13 78.6 77 42.9
BraA06t27671Z Brassica rapa HOM05D002570 ORTHO05D002689 6.5e-13 78.6 77 42.9
MBI16_g22819_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 8.5e-13 78.2 91 37.4
QL12p037631 Quercus lobata HOM05D002570 ORTHO05D002689 1.1e-12 77.8 89 38.2
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 2.5e-12 76.6 79 36.7
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.5e-12 76.6 93 33.3
AT5G43150 Arabidopsis thaliana HOM05D002570 ORTHO05D002689 3.2e-12 76.3 75 40.0
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.2e-12 76.3 78 41.0
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.2e-12 76.3 78 41.0
A02p27670 Brassica napus HOM05D002570 ORTHO05D002689 9.4e-12 74.7 79 44.3
BraA02t07806Z Brassica rapa HOM05D002570 ORTHO05D002689 9.4e-12 74.7 79 44.3
Cpa.g.sc21.103 Carica papaya HOM05D002570 ORTHO05D002689 1.2e-11 74.3 54 55.6
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 1.2e-11 74.3 79 39.2
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 3.6e-11 72.8 88 39.8
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 4.7e-11 72.4 80 38.8
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 4.7e-11 72.4 79 38.0
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 6.1e-11 72.0 79 38.0
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 7.9e-11 71.6 78 38.5
PGR083G0844 Punica granatum HOM05D002570 ORTHO05D002689 7.9e-11 71.6 88 36.4
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 7.9e-11 71.6 78 39.7
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 1.0e-10 71.2 80 40.0
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 1.0e-10 71.2 80 40.0
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 1.0e-10 71.2 82 39.0
BcaB07g30593 Brassica carinata HOM05D002570 ORTHO05D002689 1.4e-10 70.9 78 41.0
Carub.0008s0556 Capsella rubella HOM05D002570 ORTHO05D002689 1.4e-10 70.9 75 37.3
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 1.4e-10 70.9 79 39.2
CARHR180760 Cardamine hirsuta HOM05D002570 ORTHO05D002689 1.8e-10 70.5 75 40.0
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.8e-10 70.5 78 37.2
TAR381G1276 Trochodendron aralioides HOM05D001633 ORTHO05D002880 1.8e-10 70.5 73 43.8
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 3.0e-10 69.7 56 42.9
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 3.9e-10 69.3 78 37.2
Hma1.2p1_0819F.1_g223830 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 5.1e-10 68.9 86 34.9
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 5.1e-10 68.9 80 38.8
Sc15g0005580 Simmondsia chinensis HOM05D002570 ORTHO05D002689 5.1e-10 68.9 63 41.3
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 6.7e-10 68.6 81 39.5
PSO017G5699 Papaver somniferum HOM05D002570 ORTHO05D002689 6.7e-10 68.6 53 47.2
THA.LOC104812588 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 6.7e-10 68.6 51 52.9
HPP92_012494 Vanilla planifolia HOM05D002570 ORTHO05D002689 6.7e-10 68.6 74 39.2
CiPaw.07G176800 Carya illinoinensis HOM05D002570 ORTHO05D002689 8.8e-10 68.2 86 39.5
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 8.8e-10 68.2 79 36.7
Thhalv10003296m.g Eutrema salsugineum HOM05D002570 ORTHO05D002689 8.8e-10 68.2 80 40.0
Manes.05G180500 Manihot esculenta HOM05D002570 ORTHO05D002689 8.8e-10 68.2 85 36.5
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 8.8e-10 68.2 79 39.2
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.1e-09 67.8 79 36.7
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.1e-09 67.8 79 36.7
Eucgr.F00117 Eucalyptus grandis HOM05D002570 ORTHO05D002689 1.1e-09 67.8 87 37.9
Glyma.13G068400 Glycine max HOM05D002570 ORTHO05D002689 1.1e-09 67.8 59 42.4
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 1.1e-09 67.8 80 40.0
Sp2g07930 Schrenkiella parvula HOM05D002570 ORTHO05D002689 1.1e-09 67.8 82 37.8
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 1.1e-09 67.8 67 41.8
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 1.5e-09 67.4 79 38.0
PSO170G3310 Papaver somniferum HOM05D002570 ORTHO05D002689 1.5e-09 67.4 53 45.3
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 2.0e-09 67.0 78 37.2
Sc05g0001400 Simmondsia chinensis HOM05D002570 ORTHO05D002689 2.0e-09 67.0 84 41.7
Migut.C00496 Erythranthe guttata HOM05D002570 ORTHO05D002689 2.6e-09 66.6 87 35.6
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.6e-09 66.6 79 35.4
SalBow7G3896 Salvia bowleyana HOM05D002570 ORTHO05D002689 2.6e-09 66.6 56 44.6
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 3.3e-09 66.2 79 35.4
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 3.3e-09 66.2 79 35.4
Cc10_g05610 Coffea canephora HOM05D002570 ORTHO05D002689 4.4e-09 65.9 69 39.1
Peaxi162Scf00081g01321 Petunia axillaris HOM05D002570 ORTHO05D002689 4.4e-09 65.9 82 36.6
Lj2g0012585 Lotus japonicus HOM05D002570 ORTHO05D002689 5.7e-09 65.5 51 49.0
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 5.7e-09 65.5 79 39.2
THA.LOC104804738 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 7.4e-09 65.1 54 48.1
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 9.7e-09 64.7 81 37.0
Atru.chr13.811 Acer truncatum HOM05D002570 ORTHO05D002689 1.3e-08 64.3 77 32.5
Migut.N02768 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.3e-08 64.3 78 35.9
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 1.3e-08 64.3 79 39.2
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.7e-08 63.9 79 34.2
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 1.7e-08 63.9 79 38.0
Gohir.D02G089132 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.7e-08 63.9 118 30.5
Gorai.005G099800 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.7e-08 63.9 84 32.1
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 1.7e-08 63.9 81 38.3
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.2e-08 63.5 82 37.8
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.2e-08 63.5 82 37.8
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 2.2e-08 63.5 79 34.2
Sc02g0007790 Simmondsia chinensis HOM05D002570 ORTHO05D002689 2.2e-08 63.5 76 34.2
HPP92_015713 Vanilla planifolia HOM05D002570 ORTHO05D002689 2.2e-08 63.5 84 33.3
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 2.8e-08 63.2 80 37.5
Duzib116G0240 Durio zibethinus HOM05D002570 ORTHO05D002689 2.8e-08 63.2 83 33.7
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 2.8e-08 63.2 79 34.2
Rhsim07G0221300 Rhododendron simsii HOM05D002570 ORTHO05D002689 2.8e-08 63.2 77 39.0
Thecc.08G091100 Theobroma cacao HOM05D002570 ORTHO05D002689 2.8e-08 63.2 91 35.2
TAR628G0321 Trochodendron aralioides HOM05D002570 ORTHO05D002689 2.8e-08 63.2 86 33.7
Zm00001eb007320 Zea mays HOM05D002570 ORTHO05D002689 2.8e-08 63.2 51 49.0
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 3.7e-08 62.8 51 51.0
Lj3g0010275 Lotus japonicus HOM05D002570 ORTHO05D002689 3.7e-08 62.8 79 38.0
Nitab4.5_0000934g0050 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.7e-08 62.8 77 37.7
Nitab4.5_0011511g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 3.7e-08 62.8 77 37.7
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 4.8e-08 62.4 99 28.3
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 4.8e-08 62.4 79 36.7
Sabra02G0094200 Salix brachista HOM05D002570 ORTHO05D002689 4.8e-08 62.4 68 41.2
Zm00001eb400610 Zea mays HOM05D002570 ORTHO05D002689 4.8e-08 62.4 51 49.0
Zm00001eb400620 Zea mays HOM05D002570 ORTHO05D002689 4.8e-08 62.4 51 49.0
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 6.3e-08 62.0 78 34.6
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 6.3e-08 62.0 77 36.4
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 8.2e-08 61.6 80 35.0
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 8.2e-08 61.6 79 35.4
Glyma.19G015500 Glycine max HOM05D002570 ORTHO05D002689 8.2e-08 61.6 54 42.6
Potri.002G119700 Populus trichocarpa HOM05D002570 ORTHO05D002689 8.2e-08 61.6 68 41.2
TPR.G32582 Trifolium pratense HOM05D002570 ORTHO05D002689 8.2e-08 61.6 91 30.8
Aa31LG9G13240 Aethionema arabicum HOM05D002570 ORTHO05D002689 1.1e-07 61.2 74 36.5
ATR0030G054 Amborella trichopoda HOM05D002570 ORTHO05D002689 1.1e-07 61.2 68 35.3
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 1.1e-07 61.2 84 33.3
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.1e-07 61.2 79 35.4
vmacro22064 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.1e-07 61.2 83 33.7
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 1.4e-07 60.8 79 32.9
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 1.4e-07 60.8 79 32.9
Ciclev10002925m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.8e-07 60.5 99 34.3
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 1.8e-07 60.5 79 38.0
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.8e-07 60.5 70 35.7
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 1.8e-07 60.5 79 34.2
vmacro21448 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.8e-07 60.5 87 34.5
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 2.4e-07 60.1 82 32.9
Gohir.A02G081500 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.4e-07 60.1 78 33.3
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 3.1e-07 59.7 89 32.6
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 3.1e-07 59.7 79 32.9
HPP92_026648 Vanilla planifolia HOM05D002570 ORTHO05D002689 3.1e-07 59.7 84 33.3
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 4.1e-07 59.3 79 36.7
Duzib041G0717 Durio zibethinus HOM05D002570 ORTHO05D002689 4.1e-07 59.3 90 33.3
Nn5g30532 Nelumbo nucifera HOM05D002570 ORTHO05D002689 4.1e-07 59.3 79 34.2
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 5.3e-07 58.9 82 32.9
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 5.3e-07 58.9 80 33.8
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 5.3e-07 58.9 80 33.8
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 5.3e-07 58.9 82 32.9
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 5.3e-07 58.9 89 34.8
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 7.0e-07 58.5 82 32.9
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 7.0e-07 58.5 78 34.6
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 7.0e-07 58.5 79 36.7
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 9.1e-07 58.2 82 32.9
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 1.5e-06 57.4 85 36.5
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 1.5e-06 57.4 84 34.5
RcHm_v2.0_Chr6g0309331 Rosa chinensis HOM05D002570 ORTHO05D002689 1.5e-06 57.4 56 39.3
arahy.Tifrunner.gnm1.ann1.N56UGC Arachis hypogaea HOM05D002570 ORTHO05D002689 2.0e-06 57.0 68 38.2
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 2.0e-06 57.0 85 36.5
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 2.0e-06 57.0 79 36.7
Psat1g078440 Pisum sativum HOM05D002570 ORTHO05D002689 2.0e-06 57.0 61 39.3
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 2.6e-06 56.6 57 38.6
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 2.6e-06 56.6 79 36.7
Prupe.1G424900 Prunus persica HOM05D002570 ORTHO05D002689 2.6e-06 56.6 58 39.7
Sc15g0005750 Simmondsia chinensis HOM05D001633 ORTHO05D002880 2.6e-06 56.6 84 31.0
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 2.6e-06 56.6 53 45.3
Medtr6g008680 Medicago truncatula HOM05D002570 ORTHO05D002689 3.5e-06 56.2 60 36.7
THA.LOC104825766 Tarenaya hassleriana HOM05D002570 ORTHO05D002689 3.5e-06 56.2 53 41.5
Aqoxy6G02718 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 4.5e-06 55.8 77 33.8
ECA247G0437 Erigeron canadensis HOM05D005398 ORTHO05D000476 4.5e-06 55.8 71 36.6
Lsat_1_v5_gn_4_130881 Lactuca sativa HOM05D002570 ORTHO05D002689 4.5e-06 55.8 49 44.9
Aqoxy5G00897 Aquilegia oxysepala HOM05D002570 ORTHO05D002689 5.9e-06 55.5 78 33.3
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 5.9e-06 55.5 57 38.6
MD15G1072300 Malus domestica HOM05D002570 ORTHO05D002689 5.9e-06 55.5 49 44.9
unitig_578.g16139 Utricularia gibba HOM05D002570 ORTHO05D002689 5.9e-06 55.5 52 42.3
arahy.Tifrunner.gnm1.ann1.CN16C1 Arachis hypogaea HOM05D002570 ORTHO05D002689 7.7e-06 55.1 68 36.8


User provided reference genes

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