Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 2.5e-198 695.3 352 100.0
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 1.4e-113 413.7 270 75.6
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.9e-113 413.3 322 67.7
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 4.6e-112 408.7 296 70.3
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 7.8e-112 407.9 294 72.4
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 7.8e-112 407.9 302 70.2
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 5.1e-111 405.2 325 65.8
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 5.1e-111 405.2 326 63.8
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.6e-111 404.8 326 63.8
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 6.6e-111 404.8 261 75.1
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 1.5e-110 403.7 328 64.6
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 3.3e-110 402.5 304 67.8
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 3.3e-110 402.5 298 68.5
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 4.3e-110 402.1 292 70.9
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 5.6e-110 401.7 265 76.2
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 5.6e-110 401.7 325 63.4
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 5.6e-110 401.7 327 63.3
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 1.3e-109 400.6 292 70.5
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 1.3e-109 400.6 296 68.6
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 1.6e-109 400.2 299 67.9
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 2.1e-109 399.8 327 64.5
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 2.8e-109 399.4 268 73.5
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 2.8e-109 399.4 291 68.4
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 2.8e-109 399.4 275 74.5
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 3.6e-109 399.1 304 66.1
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 3.6e-109 399.1 275 74.5
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 3.6e-109 399.1 301 69.1
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 4.8e-109 398.7 304 66.8
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 8.1e-109 397.9 252 75.8
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.1e-108 397.5 326 63.2
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 1.4e-108 397.1 312 65.1
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 1.4e-108 397.1 270 73.7
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 1.4e-108 397.1 264 73.1
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 1.8e-108 396.7 275 73.8
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.4e-108 396.4 323 63.2
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.0e-108 395.6 324 62.3
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 4.0e-108 395.6 266 72.9
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 5.3e-108 395.2 325 63.7
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 6.9e-108 394.8 301 66.4
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 9.0e-108 394.4 271 71.2
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 1.2e-107 394.0 301 66.4
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 4.4e-107 392.1 260 72.3
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 4.4e-107 392.1 313 64.5
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 4.4e-107 392.1 332 62.7
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 5.8e-107 391.7 297 67.3
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 9.9e-107 391.0 303 66.7
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 9.9e-107 391.0 327 63.6
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 1.7e-106 390.2 296 66.9
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 2.9e-106 389.4 267 72.7
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 2.9e-106 389.4 266 71.4
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 2.9e-106 389.4 286 69.6
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 2.9e-106 389.4 266 74.1
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 2.9e-106 389.4 269 71.0
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 3.8e-106 389.0 374 58.3
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 6.4e-106 388.3 259 73.4
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 6.4e-106 388.3 255 74.5
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 6.4e-106 388.3 301 65.4
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 8.4e-106 387.9 258 74.0
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 8.4e-106 387.9 258 74.0
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 1.4e-105 387.1 306 64.7
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 1.9e-105 386.7 304 66.1
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.9e-105 386.7 266 72.9
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 2.4e-105 386.3 320 63.8
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 2.4e-105 386.3 292 67.1
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 2.4e-105 386.3 327 62.4
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 3.2e-105 386.0 269 70.6
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 3.2e-105 386.0 319 63.0
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 4.2e-105 385.6 301 64.5
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 1.6e-104 383.6 296 64.2
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 2.1e-104 383.3 318 61.0
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 3.5e-104 382.5 296 65.2
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 3.5e-104 382.5 242 75.6
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 4.6e-104 382.1 292 65.8
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 4.6e-104 382.1 292 65.8
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 1.0e-103 380.9 258 72.1
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 2.3e-103 379.8 259 71.8
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 5.1e-103 378.6 269 71.0
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 6.6e-103 378.3 251 73.3
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 6.6e-103 378.3 318 62.9
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 8.7e-103 377.9 296 65.2
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 1.5e-102 377.1 296 65.2
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 2.5e-102 376.3 296 64.9
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 3.3e-102 375.9 296 65.2
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 3.3e-102 375.9 242 73.1
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 4.3e-102 375.6 317 61.8
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 4.3e-102 375.6 316 61.1
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 4.3e-102 375.6 289 65.4
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 4.3e-102 375.6 289 65.4
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 9.6e-102 374.4 259 71.8
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 2.1e-101 373.2 316 61.4
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 3.6e-101 372.5 242 72.7
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 6.2e-101 371.7 287 65.2
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 3.1e-100 369.4 242 72.7
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 2.6e-99 366.3 306 63.1
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 2.6e-99 366.3 244 72.5
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 3.4e-99 365.9 312 62.2
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 2.9e-98 362.8 299 62.5
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 1.1e-97 360.9 246 71.5
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 1.6e-96 357.1 262 67.2
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 2.1e-96 356.7 378 52.9
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 3.9e-95 352.4 241 71.8
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 7.4e-94 348.2 245 70.6
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 4.0e-92 342.4 240 71.7
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 1.0e-90 337.8 238 69.3
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 1.1e-89 334.3 261 63.2
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 2.7e-88 329.7 267 62.9
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 1.3e-85 320.9 275 63.6
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.0e-83 313.5 348 52.6
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 8.4e-82 308.1 298 52.7
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 1.8e-76 290.4 294 53.1
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 2.5e-73 280.0 231 64.9
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 8.8e-71 271.6 326 50.9
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 3.1e-68 263.1 245 58.8
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 7.7e-59 231.9 272 46.3
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 2.1e-56 223.8 236 48.3
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 2.6e-54 216.9 204 60.8
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 2.6e-54 216.9 210 54.8
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 2.6e-54 216.9 231 47.6
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.8e-53 212.6 208 58.2
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 7.0e-52 208.8 243 43.6
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 6.5e-50 202.2 147 71.4
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.2e-48 198.0 107 91.6
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.7e-48 196.1 120 74.2
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 4.7e-48 196.1 120 74.2
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 1.8e-47 194.1 143 62.9
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 4.0e-47 193.0 142 69.0
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.6e-46 190.3 110 82.7
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 1.2e-43 181.4 211 43.6
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 1.6e-43 181.0 169 58.0
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 1.7e-42 177.6 116 72.4
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 7.2e-41 172.2 234 40.6
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 8.3e-37 158.7 237 37.6
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 1.4e-31 141.4 83 81.9
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 2.9e-29 133.7 97 63.9
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 1.5e-25 121.3 115 58.3
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 2.5e-25 120.6 206 35.0
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 1.0e-23 115.2 93 66.7
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 2.0e-22 110.9 65 81.5
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 7.5e-22 109.0 65 80.0
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 1.7e-21 107.8 65 80.0
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 2.0e-19 100.9 56 83.9
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.0e-19 100.9 56 83.9
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.0e-19 100.9 56 83.9
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 3.5e-19 100.1 68 70.6
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 2.8e-16 90.5 50 84.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 2.8e-16 90.5 53 79.2
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 8.1e-16 89.0 60 70.0
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 4.0e-15 86.7 154 35.7
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 7.5e-14 82.4 67 65.7
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 7.5e-14 82.4 48 79.2
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.0e-10 72.0 53 64.2
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 3.3e-09 67.0 150 33.3


User provided reference genes

Program Settings