Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 0.0e+00 1443.7 749 100.0
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 0.0e+00 1117.4 729 82.9
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 7.7e-242 840.9 754 61.4
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 7.5e-237 824.3 758 60.6
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 9.7e-237 823.9 757 60.5
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 2.7e-231 805.8 757 60.4
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 7.5e-229 797.7 757 60.0
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.3e-228 797.0 756 58.3
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 2.2e-228 796.2 759 59.4
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 9.1e-227 790.8 757 58.7
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 1.6e-226 790.0 762 59.7
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 4.5e-226 788.5 757 60.0
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 7.7e-226 787.7 757 59.3
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 7.7e-226 787.7 769 58.3
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 3.3e-224 782.3 759 58.5
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 4.2e-224 781.9 750 58.5
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 4.0e-222 775.4 759 58.1
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 8.9e-222 774.2 751 56.6
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 2.6e-221 772.7 746 58.7
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 5.7e-221 771.5 757 58.7
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 2.8e-220 769.2 757 58.0
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 4.1e-219 765.4 761 57.8
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 4.1e-219 765.4 758 58.6
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 9.2e-219 764.2 757 58.0
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 9.2e-219 764.2 749 58.5
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 1.6e-218 763.5 758 58.2
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.6e-218 763.5 755 57.5
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 2.0e-218 763.1 758 57.4
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 5.9e-218 761.5 750 58.4
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 7.8e-218 761.1 738 58.4
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 7.8e-218 761.1 750 58.5
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.0e-217 758.4 753 57.9
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 6.6e-217 758.1 750 57.7
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 8.6e-217 757.7 759 57.0
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 1.1e-216 757.3 757 57.5
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 1.1e-216 757.3 755 58.5
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 1.1e-216 757.3 757 58.0
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 2.5e-216 756.1 753 58.0
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 5.6e-216 755.0 767 56.3
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.6e-216 755.0 767 56.3
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 5.6e-216 755.0 749 58.3
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 1.2e-215 753.8 750 56.7
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.6e-215 753.4 750 58.5
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 2.8e-215 752.7 747 58.5
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 2.8e-215 752.7 750 57.2
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 3.6e-215 752.3 754 57.3
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.7e-215 751.9 750 56.9
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 4.7e-215 751.9 749 56.5
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 4.7e-215 751.9 751 57.8
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.4e-214 750.4 768 56.4
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.4e-214 750.4 747 57.6
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 2.3e-214 749.6 751 57.5
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 2.3e-214 749.6 753 57.9
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.1e-214 749.2 751 57.5
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 4.0e-214 748.8 756 56.5
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 5.2e-214 748.4 758 57.3
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.5e-213 746.9 758 56.1
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.5e-213 746.9 767 55.7
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 2.6e-213 746.1 758 56.5
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.6e-213 746.1 753 57.4
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 9.8e-213 744.2 758 56.5
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.7e-212 743.4 754 57.3
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.2e-212 743.0 755 57.1
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.9e-212 742.7 751 57.3
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 2.9e-212 742.7 745 57.2
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 4.9e-212 741.9 752 55.9
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 6.4e-212 741.5 759 56.5
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 8.3e-212 741.1 757 56.0
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 1.4e-211 740.3 751 57.1
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 3.2e-211 739.2 758 56.5
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 3.2e-211 739.2 753 56.2
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 4.1e-211 738.8 757 56.1
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.6e-210 736.9 759 56.0
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 1.6e-210 736.9 758 55.7
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 4.6e-210 735.3 757 57.3
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 2.3e-209 733.0 751 56.7
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 5.0e-209 731.9 762 56.4
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 8.6e-209 731.1 767 55.5
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 1.1e-208 730.7 765 55.4
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 1.5e-208 730.3 760 56.3
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 2.5e-208 729.6 758 57.3
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 7.3e-208 728.0 746 56.3
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.5e-208 727.6 750 56.1
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.2e-207 727.2 766 55.6
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 1.6e-207 726.9 754 56.5
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.8e-207 726.1 752 55.7
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 3.6e-207 725.7 766 55.2
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 4.7e-207 725.3 763 55.0
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.7e-207 725.3 755 55.1
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 8.0e-207 724.5 751 56.3
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.8e-206 723.4 750 56.5
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.1e-206 722.6 753 56.0
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 4.0e-206 722.2 755 55.1
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 4.0e-206 722.2 748 55.9
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 5.2e-206 721.8 763 54.8
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 5.2e-206 721.8 746 55.5
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.2e-206 721.8 744 56.5
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.2e-206 721.8 744 56.5
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 6.8e-206 721.5 765 54.9
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 2.0e-205 719.9 758 56.9
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 2.6e-205 719.5 761 54.7
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 7.5e-205 718.0 739 56.6
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.7e-204 716.8 748 55.7
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 4.9e-204 715.3 753 56.4
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 6.4e-204 714.9 753 55.5
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 6.4e-204 714.9 726 56.3
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.4e-203 713.8 744 56.3
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 3.2e-203 712.6 748 55.7
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 4.1e-203 712.2 796 54.8
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 5.4e-203 711.8 749 54.9
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 9.2e-203 711.1 754 55.2
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 3.5e-202 709.1 751 57.1
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.0e-202 708.4 776 55.7
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 6.0e-202 708.4 746 55.6
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.0e-201 706.1 776 55.3
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.2e-199 700.7 758 55.9
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.1e-198 696.0 803 53.7
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 4.0e-198 695.7 750 55.2
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 7.5e-197 691.4 739 55.1
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.4e-195 687.2 759 54.5
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 4.1e-195 685.6 718 55.3
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 5.4e-195 685.3 746 55.8
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 7.1e-195 684.9 743 54.2
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 3.5e-194 682.6 768 53.8
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.7e-193 680.2 745 55.8
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 8.6e-193 677.9 736 54.5
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.1e-192 677.6 732 54.8
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 7.3e-192 674.9 751 55.3
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 3.1e-190 669.5 764 53.8
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 5.2e-190 668.7 773 52.4
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 5.8e-189 665.2 793 51.7
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 1.1e-187 661.0 757 53.8
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.7e-185 653.7 753 52.3
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 5.1e-185 652.1 756 52.1
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.3e-184 649.4 561 62.6
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 1.5e-176 624.0 816 48.8
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.1e-175 620.2 451 71.4
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 8.4e-156 555.1 768 47.7
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 2.7e-146 523.5 640 50.8
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 5.9e-141 505.8 589 53.0
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 1.8e-134 484.2 387 67.2
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 5.4e-118 429.5 597 46.2
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 7.2e-115 419.1 597 45.7
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.3e-111 408.3 450 54.0
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.0e-109 401.0 675 41.3
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.0e-109 401.0 675 41.3
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.7e-109 399.1 471 48.8
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.9e-108 397.1 595 43.7
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.2e-106 391.7 306 68.6
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 9.2e-94 349.0 386 52.6
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 9.5e-83 312.4 537 37.2
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 1.3e-79 302.0 433 46.0
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.6e-77 293.5 183 79.8
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.7e-76 291.6 350 50.9
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 8.6e-76 289.3 286 55.2
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.2e-73 280.0 313 55.3
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 2.0e-64 251.5 269 53.2
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 2.7e-61 241.1 370 42.4
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 5.1e-52 210.3 431 36.9
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.0e-44 186.0 633 30.8
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 2.8e-42 177.9 460 33.7
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 5.0e-39 167.2 218 49.5
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 1.4e-33 149.1 647 26.6
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 6.5e-31 140.2 98 68.4
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.4e-30 139.0 143 55.9
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 1.7e-26 125.6 73 84.9
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 9.1e-25 119.8 98 62.2
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 3.4e-24 117.9 98 61.2
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 4.5e-24 117.5 70 74.3
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 4.5e-24 117.5 70 74.3
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 7.2e-22 110.2 70 72.9
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 2.4e-17 95.1 86 57.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 3.5e-16 91.3 60 71.7
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 5.0e-15 87.4 50 80.0
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.5e-14 85.9 63 68.3
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.6e-13 82.4 148 39.9
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 6.1e-13 80.5 166 34.9
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.0e-12 77.8 84 53.6
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 6.7e-12 77.0 252 32.1
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-10 72.4 310 29.0
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.5e-06 59.3 226 29.6


User provided reference genes

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