Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0224 Ceratophyllum demersum HOM05D001896 ORTHO05D001862 4.0e-116 421.4 207 100.0
CDE04G3712 Ceratophyllum demersum HOM05D001896 ORTHO05D001862 6.5e-66 254.6 146 87.0
Prupe.6G218500 Prunus persica HOM05D001896 ORTHO05D001862 3.0e-18 96.3 160 36.2
MD15G1299400 Malus domestica HOM05D001896 ORTHO05D001862 4.3e-17 92.4 164 38.4
Nn6g34510 Nelumbo nucifera HOM05D001896 ORTHO05D001862 7.3e-17 91.7 144 38.9
Manes.12G116200 Manihot esculenta HOM05D001896 ORTHO05D001862 1.6e-16 90.5 157 39.5
Oeu021445.1 Olea europaea HOM05D001896 ORTHO05D001862 2.1e-16 90.1 145 37.2
Oeu013335.1 Olea europaea HOM05D001896 ORTHO05D001862 2.8e-16 89.7 144 36.1
Thecc.01G074600 Theobroma cacao HOM05D001896 ORTHO05D001862 3.6e-16 89.4 151 38.4
COL.COLO4_11600 Corchorus olitorius HOM05D001896 ORTHO05D001862 6.2e-16 88.6 154 37.0
MD02G1188200 Malus domestica HOM05D001896 ORTHO05D001862 1.1e-15 87.8 160 33.1
TAR381G1204 Trochodendron aralioides HOM05D001896 ORTHO05D001862 1.4e-15 87.4 151 35.1
CiPaw.01G002900 Carya illinoinensis HOM05D001896 ORTHO05D001862 1.8e-15 87.0 145 36.6
Eucgr.L02595 Eucalyptus grandis HOM05D001896 ORTHO05D001862 1.8e-15 87.0 154 35.7
CiPaw.02G001600 Carya illinoinensis HOM05D001896 ORTHO05D001862 3.1e-15 86.3 156 34.0
Cfa004148 Carpinus fangiana HOM05D001896 ORTHO05D001862 2.0e-14 83.6 148 35.1
Duzib147G1417 Durio zibethinus HOM05D001896 ORTHO05D001862 2.0e-14 83.6 146 35.6
Atru.chr3.1040 Acer truncatum HOM05D001896 ORTHO05D001862 4.4e-14 82.4 162 32.7
Duzib264G0605 Durio zibethinus HOM05D001896 ORTHO05D001862 2.9e-13 79.7 158 35.4
Nn5g30636 Nelumbo nucifera HOM05D001896 ORTHO05D001862 4.9e-13 79.0 148 35.8
QL06p039341 Quercus lobata HOM05D001896 ORTHO05D001862 6.4e-13 78.6 155 32.3
Eucgr.I00689 Eucalyptus grandis HOM05D001896 ORTHO05D001862 8.4e-13 78.2 140 30.7
Solyc02g092190.1 Solanum lycopersicum HOM05D001896 ORTHO05D001862 8.4e-13 78.2 141 36.2
Sopen02g036760 Solanum pennellii HOM05D001896 ORTHO05D001862 8.4e-13 78.2 141 36.2
Manes.13G110000 Manihot esculenta HOM05D001896 ORTHO05D001862 1.1e-12 77.8 153 37.9
TAR625G0391 Trochodendron aralioides HOM05D001896 ORTHO05D001862 1.9e-12 77.0 157 31.2
Aqoxy6G02538 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 2.4e-12 76.6 152 32.9
Gorai.003G031600 Gossypium raimondii HOM05D001896 ORTHO05D001862 3.2e-12 76.3 153 37.3
RcHm_v2.0_Chr2g0108431 Rosa chinensis HOM05D001896 ORTHO05D001862 3.2e-12 76.3 158 36.1
PGSC0003DMG400021411 Solanum tuberosum HOM05D001896 ORTHO05D001862 5.4e-12 75.5 141 34.8
Gohir.A02G150400 Gossypium hirsutum HOM05D001896 ORTHO05D001862 7.1e-12 75.1 152 36.2
Duzib116G0259 Durio zibethinus HOM05D001896 ORTHO05D001862 9.2e-12 74.7 153 30.1
GSVIVG01009317001 Vitis vinifera HOM05D001896 ORTHO05D001862 9.2e-12 74.7 147 32.0
Actinidia32848 Actinidia chinensis HOM05D001896 ORTHO05D001862 1.2e-11 74.3 154 31.2
FvH4_1g17980 Fragaria vesca HOM05D001896 ORTHO05D001862 1.6e-11 73.9 163 33.1
Nitab4.5_0003129g0080 Nicotiana tabacum HOM05D001896 ORTHO05D001862 1.6e-11 73.9 147 31.3
Haze_15187 Corylus avellana HOM05D001896 ORTHO05D001862 2.1e-11 73.6 148 33.1
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 2.7e-11 73.2 143 35.7
FAN19G1457 Fragaria x ananassa HOM05D001896 ORTHO05D001862 2.7e-11 73.2 163 33.1
Gohir.D03G029900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.7e-11 73.2 153 35.9
Gohir.D11G209900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.7e-11 73.2 155 36.1
Gorai.007G225100 Gossypium raimondii HOM05D001896 ORTHO05D001862 2.7e-11 73.2 156 34.6
CiPaw.07G173200 Carya illinoinensis HOM05D001896 ORTHO05D001862 3.5e-11 72.8 149 34.2
Nitab4.5_0003129g0070 Nicotiana tabacum HOM05D001896 ORTHO05D001862 3.5e-11 72.8 151 30.5
CANSAT01G1870 Cannabis sativa HOM05D001896 ORTHO05D001862 4.6e-11 72.4 144 34.7
CiPaw.08G051100 Carya illinoinensis HOM05D001896 ORTHO05D001862 4.6e-11 72.4 147 32.0
ClCG08G016610 Citrullus lanatus HOM05D001896 ORTHO05D001862 6.0e-11 72.0 144 34.0
Gohir.A11G213300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 7.8e-11 71.6 132 37.1
Ciclev10026650m.g Citrus clementina HOM05D001896 ORTHO05D001862 1.0e-10 71.2 152 36.2
FAN23G2360 Fragaria x ananassa HOM05D001896 ORTHO05D001862 1.0e-10 71.2 163 32.5
FAN26G2644 Fragaria x ananassa HOM05D001896 ORTHO05D001862 1.0e-10 71.2 163 32.5
Duzib093G0976 Durio zibethinus HOM05D001896 ORTHO05D001862 1.7e-10 70.5 159 29.6
Peaxi162Scf00548g00211 Petunia axillaris HOM05D001896 ORTHO05D001862 1.7e-10 70.5 122 35.2
MELO3C010793.2 Cucumis melo HOM05D001896 ORTHO05D001862 2.3e-10 70.1 141 31.9
Cpa.g.c26343.5 Carica papaya HOM05D001896 ORTHO05D001862 3.0e-10 69.7 185 33.5
Sc15g0005450 Simmondsia chinensis HOM05D001896 ORTHO05D001862 3.0e-10 69.7 162 27.8
Sc15g0005480 Simmondsia chinensis HOM05D001896 ORTHO05D001862 3.0e-10 69.7 162 27.8
CAN.G1075.50 Capsicum annuum HOM05D001896 ORTHO05D001862 3.9e-10 69.3 136 33.8
PGR083G2885 Punica granatum HOM05D001896 ORTHO05D001862 3.9e-10 69.3 151 31.1
Cpa.g.sc106.35 Carica papaya HOM05D001896 ORTHO05D001862 5.1e-10 68.9 159 34.6
Peaxi162Scf00449g00045 Petunia axillaris HOM05D001896 ORTHO05D001862 5.1e-10 68.9 150 30.7
Aqoxy6G02540 Aquilegia oxysepala HOM05D001896 ORTHO05D001862 6.6e-10 68.6 153 30.7
Lj4P164T35 Lonicera japonica HOM05D001896 ORTHO05D001862 6.6e-10 68.6 155 34.2
EL10Ac1g02360 Beta vulgaris HOM05D001896 ORTHO05D001862 1.9e-09 67.0 181 28.7
CsaV3_2G026000 Cucumis sativus L. HOM05D001896 ORTHO05D001862 1.9e-09 67.0 142 31.0
QL12p038359 Quercus lobata HOM05D001896 ORTHO05D001862 1.9e-09 67.0 162 29.6
Sed0003560 Sechium edule HOM05D001896 ORTHO05D001862 1.9e-09 67.0 145 31.0
TAR628G1651 Trochodendron aralioides HOM05D001896 ORTHO05D001862 1.9e-09 67.0 151 30.5
Gohir.A01G123300 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.5e-09 66.6 159 32.7
Cpa.g.sc142.51 Carica papaya HOM05D001896 ORTHO05D001862 3.3e-09 66.2 160 29.4
Duzib052G0412 Durio zibethinus HOM05D001896 ORTHO05D001862 3.3e-09 66.2 156 31.4
FAN27G2593 Fragaria x ananassa HOM05D000371 ORTHO05D001484 4.3e-09 65.9 178 27.0
Thecc.02G119300 Theobroma cacao HOM05D001896 ORTHO05D001862 4.3e-09 65.9 149 30.9
Thecc.08G086000 Theobroma cacao HOM05D001896 ORTHO05D001862 4.3e-09 65.9 154 29.2
ClCG01G017710 Citrullus lanatus HOM05D001896 ORTHO05D001862 5.6e-09 65.5 157 32.5
Glyma.05G107000 Glycine max HOM05D001896 ORTHO05D001862 5.6e-09 65.5 150 32.0
Gohir.A05G211200 Gossypium hirsutum HOM05D001896 ORTHO05D001862 5.6e-09 65.5 148 29.1
Gohir.D01G110900 Gossypium hirsutum HOM05D001896 ORTHO05D001862 5.6e-09 65.5 161 32.9
Gorai.002G135700 Gossypium raimondii HOM05D001896 ORTHO05D001862 5.6e-09 65.5 161 32.9
CAN.G1075.51 Capsicum annuum HOM05D001896 ORTHO05D001862 7.3e-09 65.1 144 29.9
Dinv42246 Davidia involucrata HOM05D001896 ORTHO05D001862 7.3e-09 65.1 153 32.7
FvH4_2g32830 Fragaria vesca HOM05D001896 ORTHO05D001862 7.3e-09 65.1 158 29.1
FAN20G2517 Fragaria x ananassa HOM05D001896 ORTHO05D001862 7.3e-09 65.1 158 28.5
Glyma.17G159800 Glycine max HOM05D001896 ORTHO05D001862 7.3e-09 65.1 149 32.9
PGR142G1913 Punica granatum HOM05D001896 ORTHO05D001862 7.3e-09 65.1 153 29.4
Nitab4.5_0000142g0290 Nicotiana tabacum HOM05D001896 ORTHO05D001862 9.6e-09 64.7 131 31.3
Potri.014G006300 Populus trichocarpa HOM05D001896 ORTHO05D001862 9.6e-09 64.7 162 30.2
QL11p029532 Quercus lobata HOM05D001896 ORTHO05D001862 9.6e-09 64.7 152 32.2
FAN24G0761 Fragaria x ananassa HOM05D000371 ORTHO05D001484 1.2e-08 64.3 158 29.1
CsaV3_6G044240 Cucumis sativus L. HOM05D001896 ORTHO05D001862 1.6e-08 63.9 166 31.3
PGR004G2665 Punica granatum HOM05D001896 ORTHO05D001862 1.6e-08 63.9 150 31.3
Glyma.06G047600 Glycine max HOM05D001896 ORTHO05D001862 2.1e-08 63.5 154 29.2
RcHm_v2.0_Chr6g0309871 Rosa chinensis HOM05D001896 ORTHO05D001862 2.1e-08 63.5 162 30.2
VMungo0251G2220 Vigna mungo HOM05D001896 ORTHO05D001862 2.1e-08 63.5 154 30.5
Dinv44941 Davidia involucrata HOM05D001896 ORTHO05D001862 2.8e-08 63.2 175 29.1
Gohir.D05G214500 Gossypium hirsutum HOM05D001896 ORTHO05D001862 2.8e-08 63.2 154 29.2
Phvul.003G233900 Phaseolus vulgaris HOM05D001896 ORTHO05D001862 2.8e-08 63.2 153 31.4
Cc10_g05130 Coffea canephora HOM05D001896 ORTHO05D001862 3.6e-08 62.8 166 31.3
Rhsim08G0092500 Rhododendron simsii HOM05D001896 ORTHO05D001862 3.6e-08 62.8 158 33.5
Gorai.009G221200 Gossypium raimondii HOM05D001896 ORTHO05D001862 6.2e-08 62.0 148 29.7
Manes.18G048000 Manihot esculenta HOM05D001896 ORTHO05D001862 6.2e-08 62.0 157 28.7
Potri.014G014600 Populus trichocarpa HOM05D001896 ORTHO05D001862 6.2e-08 62.0 158 32.9
ATR0739G076 Amborella trichopoda HOM05D001896 ORTHO05D001862 1.1e-07 61.2 127 36.2
CiPaw.05G020300 Carya illinoinensis HOM05D001896 ORTHO05D001862 1.1e-07 61.2 149 34.2
Duzib041G0206 Durio zibethinus HOM05D001896 ORTHO05D001862 1.1e-07 61.2 162 27.2
Thhalv10026498m.g Eutrema salsugineum HOM05D012766 ORTHO05D014775 1.1e-07 61.2 156 34.6
Potri.002G117100 Populus trichocarpa HOM05D001896 ORTHO05D001862 1.1e-07 61.2 159 32.1
Potri.009G086000 Populus trichocarpa HOM05D001896 ORTHO05D001862 1.1e-07 61.2 158 31.6
AUR62037407 Chenopodium quinoa HOM05D001896 ORTHO05D001862 1.4e-07 60.8 144 29.9
Lj1g0008502 Lotus japonicus HOM05D001896 ORTHO05D001862 1.4e-07 60.8 164 25.0
Rhsim06G0063700 Rhododendron simsii HOM05D001896 ORTHO05D001862 1.4e-07 60.8 160 30.0
TPR.G24259 Trifolium pratense HOM05D001896 ORTHO05D001862 1.4e-07 60.8 152 31.6
Dinv16071 Davidia involucrata HOM05D001896 ORTHO05D001862 1.8e-07 60.5 153 31.4
Ah.15g097370 Amaranthus hybridus HOM05D001896 ORTHO05D001862 2.4e-07 60.1 139 30.2
Oeu048568.1 Olea europaea HOM05D001896 ORTHO05D001862 2.4e-07 60.1 161 29.2
AL7G12990 Arabidopsis lyrata HOM05D012766 ORTHO05D014775 3.1e-07 59.7 52 57.7
TWI56G0236 Tripterygium wilfordii HOM05D001896 ORTHO05D001862 4.0e-07 59.3 157 29.9
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 5.3e-07 58.9 145 33.1
Potri.007G006100 Populus trichocarpa HOM05D001896 ORTHO05D001862 5.3e-07 58.9 166 34.3
TWI74G0977 Tripterygium wilfordii HOM05D001896 ORTHO05D001862 5.3e-07 58.9 160 29.4
Gohir.D05G265500 Gossypium hirsutum HOM05D001896 ORTHO05D001862 6.9e-07 58.5 138 32.6
PSO170G5938 Papaver somniferum HOM05D001896 ORTHO05D001862 6.9e-07 58.5 157 29.9
Prupe.1G420800 Prunus persica HOM05D001896 ORTHO05D001862 6.9e-07 58.5 161 26.7
Lj7P110T16 Lonicera japonica HOM05D001896 ORTHO05D001862 9.0e-07 58.2 155 30.3
CSS0026617 Camellia sinensis var. sinensis HOM05D001896 ORTHO05D001862 1.2e-06 57.8 166 33.1
Dinv23033 Davidia involucrata HOM05D001896 ORTHO05D001862 1.2e-06 57.8 86 37.2
Manes.05G182700 Manihot esculenta HOM05D001896 ORTHO05D001862 1.2e-06 57.8 160 28.1
SGA_v2.0_scaffold15G07476 Striga asiatica HOM05D001896 ORTHO05D001862 1.2e-06 57.8 157 28.7
Atru.chr13.855 Acer truncatum HOM05D001896 ORTHO05D001862 1.5e-06 57.4 136 30.1
AT4G37700 Arabidopsis thaliana HOM05D012766 ORTHO05D014775 1.5e-06 57.4 149 34.9
Gorai.009G277300 Gossypium raimondii HOM05D001896 ORTHO05D001862 1.5e-06 57.4 138 32.6
Lj4C73T24 Lonicera japonica HOM05D001896 ORTHO05D001862 1.5e-06 57.4 165 27.3
Psat4g081880 Pisum sativum HOM05D001896 ORTHO05D001862 1.5e-06 57.4 148 35.1
SalBow5G1212 Salvia bowleyana HOM05D001896 ORTHO05D001862 1.5e-06 57.4 143 32.9
PSO017G0117 Papaver somniferum HOM05D001896 ORTHO05D001862 2.0e-06 57.0 157 29.9
Sabra14G0006000 Salix brachista HOM05D001896 ORTHO05D001862 2.0e-06 57.0 167 29.9
COL.COLO4_32492 Corchorus olitorius HOM05D001896 ORTHO05D001862 2.6e-06 56.6 126 33.3
DCAR_020055 Daucus carota HOM05D001896 ORTHO05D001862 2.6e-06 56.6 189 27.0
Oeu015171.1 Olea europaea HOM05D001896 ORTHO05D001862 2.6e-06 56.6 159 31.4
TWI12G1251 Tripterygium wilfordii HOM05D001896 ORTHO05D001862 2.6e-06 56.6 146 30.8
Duzib052G0328 Durio zibethinus HOM05D001896 ORTHO05D001862 3.4e-06 56.2 126 28.6
Medtr4g097260 Medicago truncatula HOM05D001896 ORTHO05D001862 3.4e-06 56.2 145 29.7
Actinidia10212 Actinidia chinensis HOM05D001896 ORTHO05D001862 4.4e-06 55.8 123 29.3
Migut.C00402 Erythranthe guttata HOM05D001896 ORTHO05D001862 4.4e-06 55.8 160 30.0
Gohir.A05G263200 Gossypium hirsutum HOM05D001896 ORTHO05D001862 4.4e-06 55.8 155 32.3
Cfa013755 Carpinus fangiana HOM05D001896 ORTHO05D001862 5.8e-06 55.5 156 25.0
Medtr3g103290 Medicago truncatula HOM05D001896 ORTHO05D001862 5.8e-06 55.5 162 27.2
Thecc.02G119200 Theobroma cacao HOM05D001896 ORTHO05D001862 5.8e-06 55.5 131 28.2
CAN.G975.10 Capsicum annuum HOM05D001896 ORTHO05D001862 7.6e-06 55.1 154 29.2
Glyma.04G046800 Glycine max HOM05D001896 ORTHO05D001862 7.6e-06 55.1 150 26.0
Nitab4.5_0000142g0300 Nicotiana tabacum HOM05D001896 ORTHO05D001862 9.9e-06 54.7 156 28.8
Sopen02g036750 Solanum pennellii HOM05D001896 ORTHO05D001862 9.9e-06 54.7 135 30.4


User provided reference genes

Program Settings