Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 0.0e+00 1842.0 956 100.0
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 0.0e+00 1087.8 985 59.3
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 1.9e-298 1029.2 992 56.7
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 1.3e-294 1016.5 986 56.1
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.6e-284 983.0 973 55.6
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 3.7e-281 971.8 984 55.1
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 1.1e-280 970.3 964 55.9
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.8e-280 969.5 969 54.7
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 1.8e-280 969.5 968 55.3
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 9.1e-280 967.2 965 54.7
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.2e-279 966.8 958 55.8
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.0e-279 966.1 984 54.8
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.9e-278 962.2 973 54.7
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 5.0e-278 961.4 973 54.7
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 8.5e-278 960.7 973 54.7
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.1e-277 960.3 1004 53.5
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.5e-277 959.9 973 54.6
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.5e-277 959.1 984 54.9
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 1.2e-276 956.8 967 54.4
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.6e-276 956.4 968 54.9
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 8.0e-276 954.1 991 53.5
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 5.7e-274 948.0 981 53.7
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.7e-273 946.4 970 54.9
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 2.2e-273 946.0 970 52.3
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 2.8e-273 945.7 970 53.6
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 2.8e-273 945.7 972 53.2
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 4.8e-273 944.9 983 53.1
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 1.1e-272 943.7 971 53.9
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 2.4e-272 942.6 991 51.8
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 9.1e-272 940.6 964 54.1
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 1.6e-271 939.9 970 53.3
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 2.2e-270 936.0 968 51.3
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 6.5e-270 934.5 964 53.9
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 1.1e-269 933.7 988 51.9
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 4.7e-268 928.3 1015 51.1
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 6.1e-268 927.9 962 53.1
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 5.2e-267 924.9 986 52.2
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 5.7e-266 921.4 1018 50.3
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 4.1e-264 915.2 989 50.8
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 7.7e-263 911.0 976 51.2
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 1.2e-260 903.7 955 52.4
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 1.8e-259 899.8 966 51.7
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 3.0e-259 899.0 964 51.9
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 3.4e-258 895.6 970 50.7
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 4.4e-258 895.2 969 51.4
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 1.3e-257 893.6 891 53.8
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 3.7e-257 892.1 968 50.8
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 6.3e-257 891.3 963 51.5
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 8.3e-257 891.0 951 51.8
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 4.1e-256 888.6 1048 48.1
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 7.0e-256 887.9 980 51.1
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 4.5e-255 885.2 958 52.5
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 5.9e-255 884.8 968 51.1
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.0e-254 884.0 969 50.3
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 1.7e-254 883.2 990 50.7
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 2.0e-250 869.8 901 53.1
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 3.4e-250 869.0 966 50.7
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 2.9e-249 865.9 991 48.4
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.1e-248 864.0 966 50.5
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.6e-247 860.1 978 50.1
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.7e-247 859.4 906 51.1
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.3e-246 857.1 984 50.0
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 5.0e-246 855.1 970 49.5
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 1.2e-242 844.0 987 47.1
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 1.2e-242 844.0 956 50.9
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 2.0e-242 843.2 1095 46.0
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 2.9e-241 839.3 964 51.2
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 4.9e-241 838.6 1010 47.3
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 4.1e-240 835.5 1020 48.4
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.4e-240 835.1 984 49.4
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 7.8e-239 831.2 962 47.7
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 7.8e-239 831.2 962 47.7
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 3.0e-238 829.3 882 51.2
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.9e-237 826.6 985 46.5
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 4.3e-237 825.5 1107 45.6
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 4.3e-237 825.5 967 47.9
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 4.0e-235 818.9 960 46.8
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 2.4e-232 809.7 960 46.4
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 9.2e-232 807.7 878 52.8
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 1.4e-227 793.9 976 46.9
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 5.2e-227 792.0 975 46.1
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 2.4e-224 783.1 970 47.0
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.2e-224 782.3 976 46.0
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 3.0e-222 776.2 938 47.4
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 5.1e-222 775.4 978 43.4
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 1.4e-219 767.3 984 45.3
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 3.1e-219 766.1 968 46.3
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 3.1e-219 766.1 975 45.4
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 3.5e-215 752.7 986 44.9
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 2.6e-210 736.5 973 44.9
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 8.7e-206 721.5 992 43.8
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 1.1e-203 714.5 751 53.7
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 4.5e-202 709.1 983 43.3
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 7.6e-202 708.4 752 51.9
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 8.4e-201 704.9 657 57.1
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 1.4e-200 704.1 983 43.1
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 5.1e-198 695.7 971 43.2
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 7.4e-197 691.8 1007 42.0
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.8e-190 670.6 584 61.3
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.4e-187 661.0 969 41.2
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 4.3e-181 639.4 979 41.6
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 5.7e-181 639.0 994 38.6
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 9.7e-181 638.3 976 37.7
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 1.3e-180 637.9 988 38.8
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.1e-179 632.9 979 42.3
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 1.9e-176 624.0 988 38.9
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 5.3e-171 605.9 945 41.8
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 1.1e-168 598.2 989 39.1
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 4.1e-163 579.7 968 38.2
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 2.2e-161 573.9 685 48.5
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 3.8e-161 573.2 973 38.3
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.7e-156 557.8 931 35.9
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.3e-150 537.3 498 60.0
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.2e-135 488.4 939 35.5
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 4.1e-131 473.4 924 33.4
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 9.8e-125 452.2 684 40.5
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 8.6e-121 439.1 526 46.4
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 1.5e-117 428.3 442 55.9
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.4e-102 377.9 409 49.1
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 4.3e-96 357.1 685 36.2
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 2.9e-60 238.0 813 25.2
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 1.6e-58 232.3 334 41.0
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 8.8e-57 226.5 305 40.7
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 9.7e-56 223.0 740 26.1
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 4.5e-53 214.2 1096 22.1
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 2.9e-52 211.5 390 32.6
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 1.8e-46 192.2 263 43.7
Cc00_g09590 Coffea canephora HOM05D003115 ORTHO05D003595 4.1e-46 191.0 157 66.9
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 7.0e-46 190.3 752 26.3
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 5.9e-45 187.2 758 24.7
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.2e-40 172.9 587 28.8
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 5.7e-40 170.6 215 45.6
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 6.3e-39 167.2 249 39.4
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.6e-37 162.5 379 33.8
BraA09t42186Z Brassica rapa HOM05D003115 ORTHO05D003595 2.5e-35 155.2 618 26.4
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 5.5e-35 154.1 129 64.3
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 6.8e-33 147.1 137 57.7
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 5.7e-32 144.1 137 56.9
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 1.7e-31 142.5 240 34.6
Rhsim06G0083800 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.1e-30 139.8 225 44.9
Psat3g191280 Pisum sativum HOM05D003115 ORTHO05D003595 1.2e-29 136.3 135 57.8
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 2.3e-25 122.1 316 28.8
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 3.7e-23 114.8 130 49.2
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 4.3e-19 101.3 113 44.2
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 9.5e-19 100.1 175 33.7
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.4e-16 91.3 126 42.1
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 1.1e-14 86.7 82 56.1
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 3.0e-12 78.6 96 44.8
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 3.0e-12 78.6 106 42.5
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 1.1e-11 76.6 86 45.3
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.5e-11 76.3 193 29.5
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 3.3e-11 75.1 107 44.9
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 1.2e-10 73.2 60 58.3
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 1.6e-10 72.8 96 43.8
Os01g0584800 Oryza sativa ssp. japonica HOM05D003115 ORTHO05D003595 2.6e-08 65.5 45 73.3


User provided reference genes

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