Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 4.0e-170 601.3 294 100.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 5.3e-130 468.0 284 77.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 8.5e-128 460.7 287 74.9
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 2.5e-127 459.1 301 74.8
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 7.2e-127 457.6 287 74.6
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 6.1e-126 454.5 273 79.1
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 8.0e-126 454.1 270 78.1
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 8.0e-126 454.1 272 78.7
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 8.0e-126 454.1 269 78.8
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.0e-125 453.8 274 78.1
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.4e-125 453.4 267 79.4
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.4e-125 453.4 276 78.3
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.4e-125 453.4 269 78.4
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.8e-125 453.0 298 73.2
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.0e-125 452.2 276 77.9
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 3.0e-125 452.2 273 78.4
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 4.0e-125 451.8 299 73.6
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 5.2e-125 451.4 286 75.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 5.2e-125 451.4 273 78.4
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.1e-124 450.3 267 79.8
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.5e-124 449.9 268 79.5
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-124 449.5 276 77.5
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.6e-124 449.1 268 78.7
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 3.3e-124 448.7 273 75.8
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.4e-124 448.4 268 78.7
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 4.4e-124 448.4 270 75.9
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 5.7e-124 448.0 269 76.6
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 7.5e-124 447.6 295 73.6
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.3e-123 446.8 293 73.4
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.7e-123 446.4 270 76.3
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.2e-123 446.0 276 77.9
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 3.7e-123 445.3 293 73.0
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.1e-122 443.7 263 78.3
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.4e-122 443.4 280 77.5
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.8e-122 443.0 283 76.0
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.1e-122 442.2 291 72.5
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 5.3e-122 441.4 273 76.6
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 5.3e-122 441.4 273 76.2
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 5.3e-122 441.4 272 74.6
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 7.0e-122 441.0 297 71.4
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.2e-121 440.3 280 73.6
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.2e-121 440.3 280 73.6
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 2.0e-121 439.5 272 76.5
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 2.0e-121 439.5 291 71.5
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 2.0e-121 439.5 270 76.3
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 2.0e-121 439.5 254 79.9
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.7e-121 439.1 269 75.5
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.7e-121 439.1 269 75.5
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 2.7e-121 439.1 273 75.8
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.7e-121 439.1 255 80.0
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 2.7e-121 439.1 263 78.3
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 3.5e-121 438.7 270 76.7
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 5.9e-121 438.0 273 75.8
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 5.9e-121 438.0 280 75.0
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.3e-120 436.8 280 72.5
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.3e-120 436.8 274 75.9
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 2.2e-120 436.0 269 75.5
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 2.9e-120 435.6 268 76.5
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 2.9e-120 435.6 295 72.2
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 3.8e-120 435.3 270 74.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 6.5e-120 434.5 262 76.3
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 8.5e-120 434.1 270 74.1
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 8.5e-120 434.1 307 70.4
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 8.5e-120 434.1 255 79.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.5e-119 433.3 267 76.0
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.5e-119 433.3 273 73.3
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.9e-119 433.0 308 68.5
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.5e-119 432.6 280 72.5
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 4.2e-119 431.8 259 76.8
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 7.2e-119 431.0 278 73.4
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 7.2e-119 431.0 266 74.4
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 7.2e-119 431.0 269 74.3
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 9.4e-119 430.6 273 75.1
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 9.4e-119 430.6 272 72.4
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.6e-118 429.9 275 73.1
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.1e-118 429.5 263 75.3
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.7e-118 429.1 276 75.4
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 3.6e-118 428.7 265 76.6
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 3.6e-118 428.7 273 72.9
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 3.0e-117 425.6 243 82.7
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 4.0e-117 425.2 285 69.8
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 4.0e-117 425.2 269 71.0
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 5.2e-117 424.9 285 69.8
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.2e-116 423.7 252 78.2
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 1.5e-116 423.3 289 71.3
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.6e-116 422.5 270 72.2
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.4e-116 422.2 263 73.8
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 3.4e-116 422.2 277 70.4
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 4.4e-116 421.8 254 78.3
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.7e-115 418.7 243 80.7
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.7e-115 418.7 243 80.7
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.8e-114 416.4 306 65.7
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.8e-114 416.4 243 79.8
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 3.1e-114 415.6 251 77.7
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 4.9e-107 391.7 278 68.3
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 7.3e-103 377.9 279 66.7
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 8.0e-102 374.4 259 68.0
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 6.8e-101 371.3 269 65.1
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.7e-99 366.7 275 62.9
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 3.7e-99 365.5 277 64.3
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 8.3e-99 364.4 219 79.9
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 9.2e-98 360.9 274 63.9
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 2.5e-95 352.8 237 72.2
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 2.6e-92 342.8 192 84.4
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 4.4e-92 342.0 268 65.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 2.4e-90 336.3 282 58.2
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 5.4e-90 335.1 192 80.7
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.2e-89 334.0 192 80.2
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.3e-88 330.5 190 81.6
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.9e-87 326.6 202 78.2
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.6e-86 323.6 190 79.5
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 8.9e-85 317.8 238 67.6
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 8.3e-83 311.2 266 56.8
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 6.0e-81 305.1 256 58.2
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 8.6e-80 301.2 243 60.5
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 7.3e-79 298.1 173 82.1
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 8.1e-78 294.7 178 78.1
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 2.0e-68 263.5 211 64.0
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.9e-66 256.9 257 53.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.9e-58 230.3 189 62.4
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.6e-57 227.3 145 80.0
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 1.8e-56 223.8 163 68.1
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 7.4e-55 218.4 259 47.9
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.1e-34 151.4 274 36.5
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 7.2e-34 148.7 82 79.3
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.4e-23 112.8 315 28.3
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.3e-22 111.3 287 32.8
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 6.9e-21 105.5 65 76.9
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 5.2e-16 89.4 64 56.2
MCO15G348 Micromonas commoda HOM05D006171 ORTHO05D268671 8.8e-16 88.6 272 32.4
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.2e-14 84.0 94 51.1
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 7.7e-12 75.5 104 49.0


User provided reference genes

Program Settings