Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 9.5e-127 456.8 227 100.0
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.7e-83 313.2 223 67.3
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 4.9e-83 311.6 221 66.5
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 4.9e-83 311.6 221 67.0
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 6.4e-83 311.2 221 66.1
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 1.4e-82 310.1 221 67.4
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 1.2e-81 307.0 226 63.7
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.6e-81 306.6 223 65.5
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 2.7e-81 305.8 221 67.0
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 4.6e-81 305.1 226 63.3
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 6.0e-81 304.7 221 65.2
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 6.0e-81 304.7 221 63.8
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 6.0e-81 304.7 224 67.0
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 1.0e-80 303.9 226 63.3
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 3.0e-80 302.4 221 65.2
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 6.7e-80 301.2 226 62.8
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.1e-79 300.4 220 65.5
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.5e-79 300.1 221 64.7
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.5e-79 300.1 226 62.4
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 2.5e-79 299.3 222 64.0
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 2.5e-79 299.3 222 64.9
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.5e-79 299.3 220 65.5
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 3.3e-79 298.9 221 66.1
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 2.1e-78 296.2 226 61.5
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 3.7e-78 295.4 221 62.9
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 4.8e-78 295.0 223 61.0
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.4e-77 293.5 225 63.1
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.8e-77 293.1 222 64.9
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 4.0e-77 292.0 222 64.4
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 5.3e-77 291.6 237 62.0
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 9.0e-77 290.8 221 62.4
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.6e-76 289.3 222 61.7
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 2.6e-76 289.3 221 61.5
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 3.4e-76 288.9 221 61.5
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.4e-76 288.9 221 61.5
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 7.6e-76 287.7 220 63.6
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 7.6e-76 287.7 228 64.5
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.0e-75 287.3 221 63.3
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 1.0e-75 287.3 223 61.9
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 1.3e-75 287.0 222 63.1
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 2.2e-75 286.2 218 62.8
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.2e-75 286.2 222 60.8
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 2.9e-75 285.8 222 62.2
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 3.8e-75 285.4 244 59.4
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.9e-75 285.0 227 59.9
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 4.9e-75 285.0 229 61.1
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 6.5e-75 284.6 224 63.4
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 6.5e-75 284.6 221 59.3
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.1e-74 283.9 223 61.0
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.1e-74 283.9 223 60.5
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.1e-74 283.9 222 61.7
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.4e-74 283.5 223 61.4
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-74 283.5 221 59.3
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.9e-74 283.1 221 61.1
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 1.9e-74 283.1 223 61.0
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 1.9e-74 283.1 221 60.6
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 2.5e-74 282.7 209 66.0
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 3.2e-74 282.3 221 61.5
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 4.2e-74 282.0 220 61.4
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 4.2e-74 282.0 221 61.5
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 4.2e-74 282.0 225 58.2
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 5.5e-74 281.6 220 60.9
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 5.5e-74 281.6 218 60.1
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 7.1e-74 281.2 227 59.5
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 9.3e-74 280.8 223 58.7
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 1.2e-73 280.4 224 62.1
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 2.1e-73 279.6 221 61.1
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 2.1e-73 279.6 220 58.6
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 2.1e-73 279.6 224 62.1
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 2.7e-73 279.3 224 62.1
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 3.5e-73 278.9 223 60.1
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.0e-73 278.1 221 59.3
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 4.3e-71 271.9 222 59.5
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 4.3e-71 271.9 221 57.5
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.3e-70 270.4 228 58.8
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.8e-69 266.5 218 57.8
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 5.3e-69 265.0 223 59.2
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 9.0e-69 264.2 221 58.8
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.2e-65 253.8 222 55.4
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.5e-63 246.9 240 52.1
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 1.5e-63 246.9 223 57.8
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.8e-62 241.9 240 51.2
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.2e-62 241.1 240 50.8
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.4e-61 239.6 220 57.7
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 3.1e-61 239.2 159 69.2
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 3.1e-61 239.2 233 50.2
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.5e-60 236.9 221 56.1
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 5.9e-60 235.0 220 52.7
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 6.5e-59 231.5 159 69.2
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.4e-58 230.3 168 66.1
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 2.7e-57 226.1 222 51.8
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 2.7e-57 226.1 172 64.0
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 4.6e-57 225.3 171 64.9
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 1.5e-55 220.3 140 72.1
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 3.3e-55 219.2 163 63.8
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 4.8e-54 215.3 159 63.5
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 3.1e-53 212.6 225 46.7
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 4.1e-53 212.2 170 60.0
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 6.9e-53 211.5 222 47.3
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 4.5e-52 208.8 230 49.1
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 5.9e-52 208.4 169 59.8
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 3.8e-51 205.7 230 48.7
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 6.5e-51 204.9 225 46.7
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 6.5e-51 204.9 226 46.9
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 7.9e-49 198.0 168 58.9
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 1.3e-43 180.6 245 42.4
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 1.2e-41 174.1 143 60.8
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 6.1e-41 171.8 117 65.0
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 2.3e-40 169.9 117 64.1
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 5.9e-36 155.2 108 67.6
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 2.0e-31 140.2 121 55.4
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.8e-29 133.7 105 61.0
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.8e-29 133.7 144 53.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 7.2e-26 121.7 222 36.0
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 9.4e-26 121.3 146 47.9
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.0e-23 113.6 106 51.9
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 9.8e-15 84.7 87 44.8
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 9.8e-15 84.7 87 44.8
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 4.1e-13 79.3 61 60.7
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 7.0e-13 78.6 52 63.5
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 7.0e-13 78.6 52 63.5
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 8.6e-11 71.6 198 29.3
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 9.5e-10 68.2 47 68.1
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 3.4e-07 59.7 181 30.9
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 9.8e-07 58.2 183 29.5
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 1.3e-06 57.8 230 26.5


User provided reference genes

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