Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.0e-75 286.6 139 100.0
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 4.3e-21 105.1 103 52.4
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 7.3e-21 104.4 103 52.4
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.2e-16 89.0 82 51.2
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 1.6e-15 86.7 122 42.6
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 1.3e-14 83.6 91 50.5
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.3e-14 83.6 135 38.5
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 1.7e-14 83.2 96 49.0
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.0e-14 82.4 93 50.5
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 5.1e-14 81.6 92 48.9
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 8.7e-14 80.9 89 52.8
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.1e-13 80.5 78 55.1
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 1.1e-13 80.5 69 56.5
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.5e-13 80.1 77 54.5
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 2.5e-13 79.3 121 42.1
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 2.5e-13 79.3 80 51.2
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 3.3e-13 79.0 73 53.4
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.3e-13 79.0 73 53.4
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.3e-13 79.0 73 53.4
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.3e-13 79.0 73 53.4
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 3.3e-13 79.0 87 50.6
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 3.3e-13 79.0 87 50.6
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 3.3e-13 79.0 73 53.4
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 5.6e-13 78.2 81 48.1
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 5.6e-13 78.2 69 58.0
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 7.3e-13 77.8 72 52.8
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 9.6e-13 77.4 87 54.0
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 1.6e-12 76.6 78 44.9
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 2.1e-12 76.3 78 51.3
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 2.1e-12 76.3 95 51.6
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 4.8e-12 75.1 69 50.7
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 4.8e-12 75.1 86 50.0
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 4.8e-12 75.1 93 51.6
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 8.1e-12 74.3 69 56.5
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 8.1e-12 74.3 89 43.8
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 1.1e-11 73.9 80 51.2
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 3.1e-11 72.4 87 47.1
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 4.0e-11 72.0 86 44.2
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 4.0e-11 72.0 86 50.0
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 4.0e-11 72.0 73 52.1
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 5.3e-11 71.6 78 44.9
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 5.3e-11 71.6 79 53.2
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 5.3e-11 71.6 82 52.4
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 9.0e-11 70.9 55 60.0
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 1.2e-10 70.5 80 51.2
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 5.8e-10 68.2 80 46.2
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 5.8e-10 68.2 67 55.2
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 1.7e-09 66.6 66 54.5
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 2.2e-09 66.2 53 62.3
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.2e-09 66.2 78 47.4
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.2e-09 66.2 57 54.4
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 2.2e-09 66.2 66 51.5
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 2.2e-09 66.2 75 54.7
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 2.2e-09 66.2 77 44.2
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 4.9e-09 65.1 73 43.8
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 6.4e-09 64.7 90 45.6
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 6.4e-09 64.7 80 47.5
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 1.1e-08 63.9 93 41.9
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 1.4e-08 63.5 83 50.6
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 1.4e-08 63.5 90 44.4
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 1.4e-08 63.5 90 44.4
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 1.2e-07 60.5 59 54.2
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 7.9e-07 57.8 86 43.0
Sopen03g005760 Solanum pennellii HOM05D002019 ORTHO05D002150 7.9e-07 57.8 154 34.4
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 1.0e-06 57.4 154 34.4
SMO196G0045 Selaginella moellendorffii HOM05D002359 ORTHO05D002394 2.3e-06 56.2 69 50.7
TPR.G37435 Trifolium pratense HOM05D002019 ORTHO05D002150 2.3e-06 56.2 62 53.2
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 3.0e-06 55.8 44 56.8
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 3.0e-06 55.8 75 42.7
SEGI_16445 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 3.9e-06 55.5 44 61.4
THA.LOC104820871 Tarenaya hassleriana HOM05D009715 ORTHO05D011857 3.9e-06 55.5 86 41.9
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 5.1e-06 55.1 105 35.2
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 5.1e-06 55.1 51 52.9
Medtr3g064350 Medicago truncatula HOM05D002019 ORTHO05D002150 5.1e-06 55.1 117 37.6
PGSC0003DMG400035805 Solanum tuberosum HOM05D004099 ORTHO05D004777 5.1e-06 55.1 102 35.3
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 6.6e-06 54.7 47 53.2
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 6.6e-06 54.7 47 53.2
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 6.6e-06 54.7 44 56.8
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 6.6e-06 54.7 47 53.2
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 6.6e-06 54.7 47 53.2
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 6.6e-06 54.7 47 53.2
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 6.6e-06 54.7 44 56.8
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 6.6e-06 54.7 56 51.8
Sopen08g022630 Solanum pennellii HOM05D004099 ORTHO05D004777 6.6e-06 54.7 102 35.3
Solyc08g068970.3 Solanum lycopersicum HOM05D004099 ORTHO05D004777 8.7e-06 54.3 102 34.3


User provided reference genes

Program Settings