Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 6.0e-36 153.7 79 100.0
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.3e-34 146.7 79 93.7
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.1e-29 132.9 79 79.7
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 75.9
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 78.5
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.5e-28 127.9 79 77.2
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 75.9
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 4.6e-28 127.5 78 75.6
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 6.0e-28 127.1 79 74.7
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 74.7
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 72.2
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 73.4
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.7e-27 125.6 79 73.4
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.3e-27 125.2 79 74.7
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.0e-27 124.8 77 76.6
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 73.4
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 74.7
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 75.9
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 5.1e-27 124.0 77 75.3
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 6.6e-27 123.6 76 75.0
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 73.4
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 70.9
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 6.6e-27 123.6 76 76.3
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 72.2
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 72.2
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 73.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 72.2
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.1e-26 122.9 77 74.0
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.1e-26 122.9 79 72.2
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.5e-26 122.5 77 72.7
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 73.4
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 70.9
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 72.2
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 70.9
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 2.5e-26 121.7 79 70.9
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 3.3e-26 121.3 76 72.4
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 4.3e-26 120.9 75 73.3
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 70.9
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 70.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 5.6e-26 120.6 77 74.0
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 7.3e-26 120.2 79 72.2
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 7.3e-26 120.2 74 74.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 7.3e-26 120.2 74 74.3
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 7.3e-26 120.2 75 73.3
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 9.6e-26 119.8 75 70.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 70.9
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.2e-25 119.4 79 69.6
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 68.4
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 70.9
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 67.1
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 68.4
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 68.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 2.8e-25 118.2 77 70.1
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.8e-25 118.2 79 67.1
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 67.1
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 65.8
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 67.1
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 67.1
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 69.6
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 4.7e-25 117.5 79 70.9
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 6.2e-25 117.1 75 70.7
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 69.6
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 65.8
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 67.1
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.4e-24 115.9 79 64.6
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.8e-24 115.5 75 72.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.8e-24 115.5 75 72.0
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.8e-24 115.5 72 72.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.4e-24 115.2 80 68.8
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 67.5
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 68.4
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 64.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 4.0e-24 114.4 76 69.7
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 76 68.4
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 79 65.8
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 5.2e-24 114.0 79 67.1
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 65.8
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 65.8
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 9.0e-24 113.2 76 68.4
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 64.6
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.5e-23 112.5 78 66.7
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.5e-23 112.5 78 65.4
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.5e-23 112.5 78 65.4
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 67.1
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.4e-23 111.3 69 72.5
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.4e-23 110.9 79 64.6
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 9.9e-23 109.8 76 67.1
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 9.9e-23 109.8 80 67.5
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.7e-22 109.0 101 54.5
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.7e-22 109.0 79 62.0
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.9e-22 108.2 80 66.2
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 3.8e-22 107.8 79 60.8
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 3.8e-22 107.8 79 60.8
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.9e-22 107.5 76 63.2
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 60.8
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.9e-21 105.5 76 67.1
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.4e-21 105.1 86 59.3
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.4e-21 105.1 79 59.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.2e-21 104.8 78 62.8
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 4.2e-21 104.4 64 70.3
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 5.4e-21 104.0 73 65.8
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.2e-20 102.8 76 64.5
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.6e-20 102.4 61 72.1
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.6e-20 102.4 63 71.4
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.6e-20 102.4 63 73.0
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.1e-20 102.1 76 64.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.1e-20 102.1 60 71.7
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.1e-20 102.1 65 67.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 2.7e-20 101.7 79 59.5
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.6e-20 100.9 61 70.5
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.6e-20 100.9 72 63.9
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 6.0e-20 100.5 73 64.4
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 7.8e-20 100.1 67 68.7
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 1.0e-19 99.8 79 60.8
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 1.0e-19 99.8 79 60.8
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 1.0e-19 99.8 79 60.8
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.0e-19 99.8 67 62.7
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.3e-19 99.4 79 60.8
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.3e-19 99.4 79 60.8
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.3e-19 99.4 70 58.6
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 3.0e-19 98.2 79 59.5
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.9e-19 97.8 66 65.2
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.1e-18 96.3 76 55.3
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.9e-18 95.5 69 59.4
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.5e-18 95.1 75 60.0
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.5e-18 95.1 75 60.0
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.5e-18 95.1 75 60.0
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.5e-18 95.1 75 60.0
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 53.9
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 3.3e-18 94.7 57 75.4
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 4.3e-18 94.4 59 67.8
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 5.6e-18 94.0 57 70.2
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.3e-17 92.8 54 72.2
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.6e-17 92.4 55 74.5
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 3.6e-17 91.3 65 66.2
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 6.2e-17 90.5 81 50.6
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.1e-16 89.7 74 55.4
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.1e-16 88.2 65 63.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 4.0e-16 87.8 53 67.9
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 3.2e-13 78.2 59 57.6
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 7.1e-13 77.0 61 63.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.1e-09 65.5 79 40.5
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 3.7e-09 64.7 62 48.4
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.8e-08 62.4 68 44.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.8e-08 62.4 64 43.8


User provided reference genes

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