Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 3.4e-92 341.7 176 100.0
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 5.4e-53 211.5 136 73.5
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 5.0e-51 204.9 135 71.9
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 6.6e-51 204.5 136 69.1
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.1e-50 203.8 136 69.1
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.5e-50 203.4 136 69.1
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.3e-50 202.2 136 70.6
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 5.6e-50 201.4 137 67.9
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 7.3e-50 201.1 136 71.3
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 9.5e-50 200.7 136 68.4
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.2e-49 200.3 136 68.4
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.2e-49 200.3 135 69.6
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.6e-49 199.9 132 72.0
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.6e-49 199.9 136 68.4
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.1e-49 199.5 136 67.6
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 3.6e-49 198.7 136 69.9
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 3.6e-49 198.7 136 69.1
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 6.2e-49 198.0 136 68.4
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 6.2e-49 198.0 136 69.1
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.1e-48 197.2 136 68.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.1e-48 197.2 137 67.2
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-48 196.8 136 68.4
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.8e-48 196.4 137 65.7
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.8e-48 196.4 136 69.1
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.8e-48 196.4 136 68.4
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 2.3e-48 196.1 136 66.9
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.3e-48 196.1 136 68.4
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 3.1e-48 195.7 137 67.9
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 4.0e-48 195.3 137 68.6
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 5.2e-48 194.9 136 69.1
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 5.2e-48 194.9 136 67.6
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 5.2e-48 194.9 136 70.6
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 6.8e-48 194.5 136 68.4
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.8e-48 194.5 137 65.0
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 1.2e-47 193.7 136 65.4
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.2e-47 193.7 136 67.6
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-47 193.4 135 68.9
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.5e-47 193.4 136 66.9
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.5e-47 193.4 136 64.7
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.6e-47 192.6 134 67.2
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 4.4e-47 191.8 136 65.4
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.4e-47 191.8 136 65.4
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.4e-47 191.8 136 65.4
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.4e-47 191.8 136 65.4
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 4.4e-47 191.8 136 65.4
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 7.5e-47 191.0 136 66.9
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 7.5e-47 191.0 136 66.9
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 7.5e-47 191.0 136 66.9
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.3e-46 190.3 136 69.1
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.3e-46 190.3 136 67.6
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.7e-46 189.9 132 67.4
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 2.9e-46 189.1 136 65.4
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 2.9e-46 189.1 136 66.2
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.9e-46 189.1 136 66.2
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.9e-46 189.1 136 67.6
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.9e-46 189.1 138 65.2
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.9e-46 189.1 162 58.0
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 3.7e-46 188.7 137 62.8
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.7e-46 188.7 136 67.6
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 4.9e-46 188.3 136 67.6
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 4.9e-46 188.3 136 64.7
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 4.9e-46 188.3 136 64.7
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 6.4e-46 188.0 136 64.0
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 8.3e-46 187.6 135 65.9
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-45 187.2 136 63.2
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.1e-45 187.2 139 64.0
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.1e-45 187.2 137 66.4
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.1e-45 187.2 125 68.8
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 1.1e-45 187.2 136 65.4
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 1.1e-45 187.2 136 66.2
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.4e-45 186.8 136 65.4
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.4e-45 186.8 139 64.7
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.9e-45 186.4 136 65.4
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.4e-45 186.0 136 66.9
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 3.2e-45 185.7 136 64.0
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.2e-45 185.7 138 63.8
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.2e-45 185.7 138 63.8
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 4.1e-45 185.3 136 62.5
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.4e-45 184.9 126 69.8
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.0e-45 184.5 127 67.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 1.2e-44 183.7 135 60.7
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.7e-44 182.6 136 67.6
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.5e-44 182.2 136 65.4
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 4.6e-44 181.8 124 65.3
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.7e-43 179.9 136 61.8
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 3.9e-43 178.7 136 58.8
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 5.0e-43 178.3 136 58.8
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 6.6e-43 177.9 136 58.1
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 6.6e-43 177.9 136 58.1
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 6.6e-43 177.9 136 61.0
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 8.6e-43 177.6 137 60.6
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.9e-42 176.4 121 69.4
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 2.5e-42 176.0 173 52.0
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 4.3e-42 175.3 158 53.8
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 5.6e-42 174.9 139 59.0
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 7.3e-42 174.5 136 58.1
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 7.3e-42 174.5 130 62.3
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 9.5e-42 174.1 140 57.1
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.1e-41 172.9 129 62.0
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.8e-41 172.6 121 68.6
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.7e-41 171.8 135 60.0
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 4.7e-41 171.8 136 55.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 4.7e-41 171.8 136 55.9
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.8e-40 169.9 137 56.9
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 3.1e-40 169.1 180 51.1
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 3.4e-39 165.6 136 57.4
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.9e-38 161.8 137 56.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 2.4e-37 159.5 136 53.7
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.2e-37 159.1 137 55.5
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.0e-36 154.8 136 55.1
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.8e-36 154.5 137 54.0
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 1.2e-33 147.1 94 72.3
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 8.9e-32 141.0 92 70.7
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.1e-29 134.0 89 68.5
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.4e-29 133.7 135 52.6
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.4e-29 133.7 88 68.2
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 3.2e-29 132.5 125 52.8
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 5.4e-29 131.7 136 49.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 7.1e-29 131.3 88 67.0
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 9.2e-29 131.0 119 54.6
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.5e-28 129.0 127 55.1
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 4.6e-28 128.6 88 65.9
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.0e-27 127.5 112 59.8
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.9e-26 123.2 88 63.6
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 4.3e-26 122.1 137 43.8
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 5.6e-26 121.7 135 45.9
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 9.6e-26 120.9 92 59.8
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.1e-25 119.8 137 48.9
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 2.1e-25 119.8 88 64.8
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 2.4e-24 116.3 139 44.6
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 5.2e-24 115.2 72 73.6
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 7.6e-23 111.3 90 54.4
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.6e-20 102.1 99 50.5
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.0e-19 100.9 95 50.5
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 1.0e-19 100.9 95 50.5
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 1.0e-19 100.9 95 50.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.7e-19 100.1 70 67.1
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 5.1e-19 98.6 71 63.4
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.3e-18 95.5 136 41.9
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 9.6e-18 94.4 94 57.4
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.9e-15 84.3 132 37.1
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 3.8e-14 82.4 56 69.6
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.2e-12 77.4 59 57.6
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.0e-11 74.3 52 57.7
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.8e-11 73.6 71 53.5
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 2.5e-10 69.7 51 64.7
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 4.3e-10 68.9 57 50.9
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 9.6e-10 67.8 47 66.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 9.6e-10 67.8 47 66.0
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.6e-09 67.0 54 63.0
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 8.1e-09 64.7 52 59.6


User provided reference genes

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