Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 0.0e+00 2229.9 1142 100.0
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 0.0e+00 1705.6 1321 69.4
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 1705.3 1322 69.0
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 0.0e+00 1699.1 1319 69.2
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 1698.3 1318 68.8
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 0.0e+00 1698.3 1321 69.3
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 0.0e+00 1689.5 1321 68.6
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 0.0e+00 1686.0 1321 68.6
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 1686.0 1326 68.3
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 0.0e+00 1685.2 1319 68.5
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1684.5 1319 68.2
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 0.0e+00 1682.2 1320 68.4
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 1680.2 1320 68.3
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 0.0e+00 1679.8 1318 68.7
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 0.0e+00 1678.3 1319 68.4
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 1677.1 1333 68.2
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 0.0e+00 1677.1 1333 68.2
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 0.0e+00 1677.1 1322 68.0
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 1676.0 1319 68.2
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1675.6 1322 67.9
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 0.0e+00 1673.7 1337 67.5
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 0.0e+00 1673.3 1320 69.2
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 0.0e+00 1672.9 1337 67.5
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 0.0e+00 1670.2 1320 67.8
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1669.8 1322 67.8
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 0.0e+00 1669.8 1320 67.8
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1668.3 1321 67.9
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 1668.3 1289 69.2
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1668.3 1318 67.9
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 1666.7 1318 68.1
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 0.0e+00 1666.4 1322 67.6
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1665.2 1320 67.7
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 0.0e+00 1662.9 1318 67.6
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 0.0e+00 1655.6 1319 67.8
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 1653.3 1324 67.4
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 0.0e+00 1653.3 1317 66.7
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 0.0e+00 1652.1 1329 67.1
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1651.7 1321 67.7
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 0.0e+00 1648.6 1335 66.7
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 0.0e+00 1645.9 1322 66.9
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 0.0e+00 1645.6 1323 66.9
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 0.0e+00 1645.6 1358 66.3
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 0.0e+00 1643.6 1354 66.0
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 0.0e+00 1643.2 1332 66.6
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 0.0e+00 1643.2 1331 66.9
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 0.0e+00 1642.9 1330 66.5
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 0.0e+00 1642.5 1318 66.9
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 0.0e+00 1641.7 1343 66.3
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 0.0e+00 1636.3 1322 66.8
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 1635.5 1344 66.1
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 0.0e+00 1635.2 1347 66.1
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 1634.4 1319 67.0
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 0.0e+00 1634.0 1330 66.6
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 0.0e+00 1631.7 1324 66.0
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 0.0e+00 1628.2 1317 67.0
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 0.0e+00 1627.8 1318 65.5
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 0.0e+00 1626.3 1315 66.9
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 0.0e+00 1625.9 1321 66.8
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1625.1 1315 67.0
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 0.0e+00 1623.6 1341 65.7
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 0.0e+00 1623.2 1320 66.3
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 0.0e+00 1622.8 1331 65.3
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 0.0e+00 1617.8 1319 66.3
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 0.0e+00 1617.8 1345 65.6
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 0.0e+00 1612.4 1317 66.1
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 0.0e+00 1610.1 1314 65.4
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 0.0e+00 1609.0 1314 65.3
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 0.0e+00 1606.3 1314 65.1
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 0.0e+00 1603.6 1317 65.6
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 0.0e+00 1598.2 1325 65.2
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 0.0e+00 1595.5 1318 65.0
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 0.0e+00 1595.1 1316 65.3
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 0.0e+00 1595.1 1315 65.2
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 0.0e+00 1592.4 1316 64.8
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 1590.5 1314 64.7
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 0.0e+00 1586.6 1316 65.3
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 0.0e+00 1583.2 1351 63.9
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 0.0e+00 1578.9 1324 65.2
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 0.0e+00 1578.1 1322 64.4
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 0.0e+00 1577.4 1321 64.9
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 0.0e+00 1570.1 1314 65.3
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 0.0e+00 1554.7 1370 62.3
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 0.0e+00 1552.0 1324 63.3
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 0.0e+00 1543.9 1256 66.1
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 0.0e+00 1541.2 1324 63.1
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 0.0e+00 1541.2 1326 63.0
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 0.0e+00 1540.0 1336 63.2
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 0.0e+00 1536.5 1319 63.2
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 0.0e+00 1536.2 1321 63.4
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 0.0e+00 1534.6 1328 63.0
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 0.0e+00 1526.9 1322 62.6
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 1525.8 1328 62.5
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 0.0e+00 1521.1 1321 63.0
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 0.0e+00 1520.8 1321 63.8
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 0.0e+00 1515.0 1328 62.3
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 0.0e+00 1508.4 1376 60.5
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 0.0e+00 1507.7 1336 61.9
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 0.0e+00 1483.0 1330 61.9
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 0.0e+00 1461.8 1290 62.0
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 0.0e+00 1438.3 1332 59.3
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 0.0e+00 1435.6 1262 62.4
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 0.0e+00 1427.5 1323 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 0.0e+00 1422.9 1337 58.4
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 1374.4 1344 56.1
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 0.0e+00 1354.3 1336 55.2
CDE07G0361 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 0.0e+00 1338.9 802 87.0
Peaxi162Scf00256g00817 Petunia axillaris HOM05D003720 ORTHO05D005312 0.0e+00 1334.7 1095 65.4
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1256.1 954 69.4
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 0.0e+00 1251.9 1092 62.5
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 0.0e+00 1221.5 920 70.4
Nitab4.5_0002116g0030 Nicotiana tabacum HOM05D003720 ORTHO05D005312 0.0e+00 1144.8 887 68.4
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 0.0e+00 1119.8 948 64.2
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 6.5e-301 1037.7 1385 45.8
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 2.6e-297 1025.8 783 70.0
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 2.3e-261 906.4 692 69.5
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 4.9e-155 553.1 337 83.1
SHI03184 Sapria himalayana HOM05D003720 ORTHO05D005312 4.3e-151 540.0 583 53.3
PRCOL_00006435 Prasinoderma coloniale HOM05D003720 ORTHO05D005312 1.1e-122 445.7 1385 28.7
CDE07G1594 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 2.7e-121 441.0 222 97.7
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 1.6e-113 415.2 230 88.7
Nitab4.5_0000100g0300 Nicotiana tabacum HOM05D003720 ORTHO05D005312 2.7e-113 414.5 230 88.3
Nitab4.5_0002116g0040 Nicotiana tabacum HOM05D003720 ORTHO05D005312 6.1e-113 413.3 230 88.3
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 1.3e-110 405.6 1574 27.1
arahy.Tifrunner.gnm1.ann1.HL09EZ Arachis hypogaea HOM05D003720 ORTHO05D005312 3.6e-97 360.9 216 82.9
arahy.Tifrunner.gnm1.ann1.NRTP45 Arachis hypogaea HOM05D003720 ORTHO05D005312 9.7e-95 352.8 202 86.1
arahy.Tifrunner.gnm1.ann1.GFGC5E Arachis hypogaea HOM05D003720 ORTHO05D005312 2.2e-94 351.7 202 85.6
Cpa.g.sc23.156 Carica papaya HOM05D003720 ORTHO05D005312 6.5e-91 340.1 182 90.7
arahy.Tifrunner.gnm1.ann1.CMVH84 Arachis hypogaea HOM05D003720 ORTHO05D005312 8.5e-83 313.2 175 87.4
arahy.Tifrunner.gnm1.ann1.QKW76S Arachis hypogaea HOM05D003720 ORTHO05D005312 2.7e-81 308.1 174 86.8
CDE06G1063 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 1.7e-75 288.9 230 68.7
CDE07G0366 Ceratophyllum demersum HOM05D003720 ORTHO05D017820 2.5e-74 285.0 147 98.6
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 6.1e-73 280.4 178 82.6
MBI09_g30143_MAGBIO Magnolia biondii HOM05D003720 ORTHO05D005312 4.5e-68 264.2 168 79.8
FAN23G1240 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.9e-67 261.5 253 58.5
arahy.Tifrunner.gnm1.ann1.XZYA5I Arachis hypogaea HOM05D003720 ORTHO05D005312 1.9e-66 258.8 183 73.8
arahy.Tifrunner.gnm1.ann1.UX9YIA Arachis hypogaea HOM05D003720 ORTHO05D005312 1.2e-65 256.1 352 46.6
arahy.Tifrunner.gnm1.ann1.H6EN9A Arachis hypogaea HOM05D003720 ORTHO05D005312 2.7e-52 211.8 144 79.2
arahy.Tifrunner.gnm1.ann1.JURE59 Arachis hypogaea HOM05D003720 ORTHO05D005312 1.5e-50 206.1 119 87.4
Peaxi162Scf00256g00812 Petunia axillaris HOM05D003720 ORTHO05D017820 2.8e-33 148.7 84 83.3
unitig_22.g6633 Utricularia gibba HOM05D003720 ORTHO05D017820 2.4e-29 135.6 84 76.2
Nitab4.5_0002116g0020 Nicotiana tabacum HOM05D003720 ORTHO05D017820 5.3e-24 117.9 69 79.7
TAR374G0606 Trochodendron aralioides HOM05D003720 ORTHO05D017820 2.1e-12 79.3 47 80.9
Dinv41561 Davidia involucrata HOM05D003720 ORTHO05D017820 4.6e-12 78.2 54 64.8
AagrBONN_evm.TU.Sc2ySwM_228.193 Anthoceros agrestis HOM05D011343 ORTHO05D016526 3.0e-11 75.5 204 27.9
Lsat_1_v5_gn_7_20540 Lactuca sativa HOM05D003720 ORTHO05D007744 9.6e-10 70.5 43 86.0
Lsat_1_v5_gn_1_94860 Lactuca sativa HOM05D003720 ORTHO05D017820 2.8e-09 68.9 46 80.4
Pp3c2_7460 Physcomitrium patens HOM05D011343 ORTHO05D016526 8.1e-09 67.4 194 28.4
Pp3c3_16200 Physcomitrium patens HOM05D011343 ORTHO05D016526 1.1e-08 67.0 572 23.3
Pp3c3_6660 Physcomitrium patens HOM05D003720 ORTHO05D005312 1.8e-08 66.2 66 48.5
Pp3c3_6650 Physcomitrium patens HOM05D003720 ORTHO05D318947 3.4e-07 62.0 81 40.7


User provided reference genes

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