Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2402 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 4.9e-73 277.7 142 100.0
CDE06G1108 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.4e-48 196.4 251 51.4
CDE08G0105 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.2e-42 176.8 235 48.9
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 1.1e-24 117.1 77 71.4
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 1.1e-24 117.1 77 71.4
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 1.1e-24 117.1 77 71.4
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 1.9e-24 116.3 77 71.4
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 3.2e-24 115.5 77 68.8
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 3.2e-24 115.5 77 68.8
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 3.2e-24 115.5 77 68.8
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 5.5e-24 114.8 77 70.1
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 5.5e-24 114.8 77 67.5
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 5.5e-24 114.8 77 70.1
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 5.5e-24 114.8 77 70.1
Aqoxy5G01323 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 7.2e-24 114.4 78 69.2
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 7.2e-24 114.4 77 68.8
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 7.2e-24 114.4 77 68.8
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 7.2e-24 114.4 77 68.8
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 9.4e-24 114.0 77 68.8
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 9.4e-24 114.0 77 68.8
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 9.4e-24 114.0 77 70.1
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 9.4e-24 114.0 77 68.8
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 9.4e-24 114.0 77 68.8
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 1.2e-23 113.6 144 45.1
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.2e-23 113.6 77 68.8
TAR625G1241 Trochodendron aralioides HOM05D004160 ORTHO05D004757 1.2e-23 113.6 77 71.4
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 1.6e-23 113.2 77 68.8
Duzib093G1656 Durio zibethinus HOM05D004160 ORTHO05D004757 1.6e-23 113.2 77 68.8
ECA247G3853 Erigeron canadensis HOM05D004160 ORTHO05D004757 1.6e-23 113.2 77 68.8
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.6e-23 113.2 77 67.5
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 1.6e-23 113.2 77 67.5
HanXRQChr02g0047531 Helianthus annuus HOM05D004160 ORTHO05D004757 1.6e-23 113.2 77 68.8
MBI06_g36045_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 1.6e-23 113.2 74 73.0
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 2.1e-23 112.8 77 67.5
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 2.1e-23 112.8 77 67.5
Nn5g29924 Nelumbo nucifera HOM05D004160 ORTHO05D004757 2.1e-23 112.8 77 68.8
arahy.Tifrunner.gnm1.ann1.GVS2KG Arachis hypogaea HOM05D004160 ORTHO05D004757 2.7e-23 112.5 77 67.5
arahy.Tifrunner.gnm1.ann1.RJ93MJ Arachis hypogaea HOM05D004160 ORTHO05D004757 2.7e-23 112.5 77 67.5
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 2.7e-23 112.5 77 68.8
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 3.6e-23 112.1 77 68.8
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 3.6e-23 112.1 77 67.5
Medtr5g065930 Medicago truncatula HOM05D004160 ORTHO05D004757 3.6e-23 112.1 77 67.5
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 3.6e-23 112.1 77 67.5
Oeu011647.1 Olea europaea HOM05D004160 ORTHO05D004757 4.7e-23 111.7 74 70.3
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 6.1e-23 111.3 77 64.9
Lsat_1_v5_gn_1_1800 Lactuca sativa HOM05D004160 ORTHO05D004757 6.1e-23 111.3 77 67.5
LjContig00408g0003189 Lotus japonicus HOM05D004160 ORTHO05D004757 6.1e-23 111.3 77 66.2
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 6.1e-23 111.3 77 66.2
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 1.0e-22 110.5 77 66.2
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 1.0e-22 110.5 77 64.9
Gohir.A05G220700 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.0e-22 110.5 77 64.9
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 1.0e-22 110.5 76 65.8
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 1.4e-22 110.2 131 46.6
CsaV3_2G030410 Cucumis sativus L. HOM05D004160 ORTHO05D004757 1.4e-22 110.2 77 64.9
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 1.4e-22 110.2 77 66.2
PSO675G9245 Papaver somniferum HOM05D004160 ORTHO05D004757 1.4e-22 110.2 77 64.9
Sed0023007 Sechium edule HOM05D004160 ORTHO05D004757 1.4e-22 110.2 77 64.9
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 1.4e-22 110.2 136 45.6
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 1.8e-22 109.8 77 64.9
Gohir.D05G223500 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.8e-22 109.8 77 63.6
Potri.005G157500 Populus trichocarpa HOM05D004160 ORTHO05D004757 1.8e-22 109.8 77 67.5
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 2.3e-22 109.4 77 63.6
Os02g0781700 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 2.3e-22 109.4 77 63.6
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 2.3e-22 109.4 77 63.6
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 2.3e-22 109.4 77 64.9
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 3.0e-22 109.0 77 63.6
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 3.0e-22 109.0 77 64.9
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 4.0e-22 108.6 77 64.9
SEGI_35412 Sequoiadendron giganteum HOM05D004160 ORTHO05D004757 4.0e-22 108.6 77 62.3
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 5.2e-22 108.2 77 64.9
Oeu012754.1 Olea europaea HOM05D004160 ORTHO05D004757 5.2e-22 108.2 77 64.9
Sed0000869 Sechium edule HOM05D004160 ORTHO05D004757 5.2e-22 108.2 77 63.6
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 6.8e-22 107.8 76 65.8
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 6.8e-22 107.8 77 66.2
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 8.8e-22 107.5 77 64.9
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 8.8e-22 107.5 77 63.6
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 8.8e-22 107.5 77 64.9
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 8.8e-22 107.5 77 64.9
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 1.2e-21 107.1 77 64.9
Hund16867 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.2e-21 107.1 77 67.5
SGA_v2.0_scaffold15G07419 Striga asiatica HOM05D004160 ORTHO05D004757 1.2e-21 107.1 75 64.0
PSO541G4918 Papaver somniferum HOM05D004160 ORTHO05D004757 1.5e-21 106.7 77 62.3
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 2.0e-21 106.3 77 63.6
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 2.0e-21 106.3 147 41.5
Gorai.009G230600 Gossypium raimondii HOM05D004160 ORTHO05D004757 2.0e-21 106.3 74 63.5
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 2.6e-21 105.9 77 61.0
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 2.6e-21 105.9 77 61.0
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 2.6e-21 105.9 77 62.3
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 3.4e-21 105.5 74 64.9
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 3.4e-21 105.5 77 62.3
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 4.4e-21 105.1 77 61.0
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 4.4e-21 105.1 137 40.9
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 7.5e-21 104.4 75 61.3
AUR62019025 Chenopodium quinoa HOM05D004160 ORTHO05D004757 1.3e-20 103.6 77 62.3
AUR62027862 Chenopodium quinoa HOM05D004160 ORTHO05D004757 1.3e-20 103.6 77 62.3
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 1.3e-20 103.6 93 59.1
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 2.2e-20 102.8 77 62.3
THA.LOC104800042 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 6.3e-20 101.3 77 59.7
Carub.0008s0959 Capsella rubella HOM05D004160 ORTHO05D004757 1.4e-19 100.1 77 58.4
HPP92_002309 Vanilla planifolia HOM05D004160 ORTHO05D004757 1.8e-19 99.8 77 62.3
AL8G23640 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 2.4e-19 99.4 77 58.4
AT5G49710 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 2.4e-19 99.4 77 58.4
A01p15950 Brassica napus HOM05D004160 ORTHO05D004757 2.4e-19 99.4 77 58.4
BraA01t01529Z Brassica rapa HOM05D004160 ORTHO05D004757 2.4e-19 99.4 77 58.4
BcaC06g32873 Brassica carinata HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
A03p55420 Brassica napus HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
C01p19930 Brassica napus HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
C07p53710 Brassica napus HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
BolC1t01921H Brassica oleracea HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
BolC7t45862H Brassica oleracea HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
BraA03t14616Z Brassica rapa HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
Thhalv10026080m.g Eutrema salsugineum HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
Sp7g22590 Schrenkiella parvula HOM05D004160 ORTHO05D004757 3.1e-19 99.0 77 58.4
BcaNung04961 Brassica carinata HOM05D004160 ORTHO05D004757 4.1e-19 98.6 77 57.1
AL7G28600 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 5.4e-19 98.2 77 58.4
AT4G24590 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 5.4e-19 98.2 77 58.4
Carub.0007s1648 Capsella rubella HOM05D004160 ORTHO05D004757 5.4e-19 98.2 77 58.4
A08p21430 Brassica napus HOM05D004160 ORTHO05D004757 7.0e-19 97.8 77 57.1
BolC8t48579H Brassica oleracea HOM05D004160 ORTHO05D004757 9.1e-19 97.4 77 57.1
CARHR231990 Cardamine hirsuta HOM05D004160 ORTHO05D004757 1.2e-18 97.1 77 57.1
Zm00001eb315410 Zea mays HOM05D004160 ORTHO05D004757 1.2e-18 97.1 77 61.0
BcaC07g38165 Brassica carinata HOM05D004160 ORTHO05D004757 1.6e-18 96.7 77 57.1
BraA08t34092Z Brassica rapa HOM05D004160 ORTHO05D004757 1.6e-18 96.7 77 55.8
BcaB03g12437 Brassica carinata HOM05D004160 ORTHO05D004757 2.7e-18 95.9 77 55.8
CARHR259070 Cardamine hirsuta HOM05D004160 ORTHO05D004757 3.5e-18 95.5 77 55.8
ClCG08G011790 Citrullus lanatus HOM05D004160 ORTHO05D004757 3.5e-18 95.5 63 68.3
EL10Ac1g01077 Beta vulgaris HOM05D004160 ORTHO05D004757 7.7e-18 94.4 82 57.3
Zm00001eb101080 Zea mays HOM05D004160 ORTHO05D004757 7.7e-18 94.4 77 57.1
Os09g0465500 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 1.3e-17 93.6 77 57.1
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 5.0e-17 91.7 86 57.0
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 6.5e-17 91.3 87 51.7
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 6.5e-17 91.3 131 41.2
BcaC09g50849 Brassica carinata HOM05D004160 ORTHO05D004757 4.7e-15 85.1 63 61.9
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 1.5e-13 80.1 73 45.2
SHI28776 Sapria himalayana HOM05D004160 ORTHO05D004757 4.4e-13 78.6 54 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1569 Anthoceros agrestis HOM05D004160 ORTHO05D004757 2.2e-12 76.3 75 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 2.8e-12 75.9 75 45.3
DCAR_012861 Daucus carota HOM05D004160 ORTHO05D004757 3.7e-12 75.5 51 64.7
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 3.7e-12 75.5 113 39.8
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 4.9e-12 75.1 50 66.0
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 8.3e-12 74.3 51 62.7
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 2.4e-11 72.8 50 64.0
Pp3c23_8360 Physcomitrium patens HOM05D004160 ORTHO05D004757 2.4e-11 72.8 75 42.7
Zm00001eb015350 Zea mays HOM05D004160 ORTHO05D004757 2.4e-11 72.8 65 52.3
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 3.1e-11 72.4 50 62.0
Pp3c8_11730 Physcomitrium patens HOM05D004160 ORTHO05D004757 5.4e-11 71.6 73 42.5
SalBow1G6265 Salvia bowleyana HOM05D004160 ORTHO05D004757 5.4e-11 71.6 49 61.2
Glyma.12G143501 Glycine max HOM05D000739 ORTHO05D004757 3.5e-10 68.9 62 54.8
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 3.5e-10 68.9 52 59.6
Sabra02G0081700 Salix brachista HOM05D004160 ORTHO05D004757 4.5e-10 68.6 47 61.7
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 5.9e-10 68.2 51 56.9
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 1.3e-09 67.0 51 54.9
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 6.6e-09 64.7 50 58.0
vmacro04668 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 1.1e-08 63.9 36 77.8
Zm00001eb401670 Zea mays HOM05D004160 ORTHO05D004757 8.0e-07 57.8 50 52.0
SEGI_02584 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 1.0e-06 57.4 76 32.9


User provided reference genes

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