Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 5.4e-206 720.7 348 100.0
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 4.2e-134 481.9 349 66.2
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 5.5e-134 481.5 327 69.4
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 7.2e-134 481.1 350 67.4
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 2.1e-133 479.6 339 67.3
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 6.1e-133 478.0 339 67.0
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 6.1e-133 478.0 339 68.1
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 1.0e-132 477.2 341 66.3
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 1.8e-132 476.5 351 64.4
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 2.3e-132 476.1 355 65.4
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 4.0e-132 475.3 312 70.8
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 4.0e-132 475.3 332 68.1
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 6.7e-132 474.6 347 65.1
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 2.6e-131 472.6 355 65.4
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 7.5e-131 471.1 349 64.8
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 7.5e-131 471.1 332 67.2
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 9.7e-131 470.7 324 68.5
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.3e-130 470.3 345 65.2
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 8.2e-130 467.6 350 64.9
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 8.2e-130 467.6 332 67.2
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 1.4e-129 466.8 319 68.7
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 1.4e-129 466.8 342 65.5
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 1.4e-129 466.8 327 69.1
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.8e-129 466.5 311 70.1
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 2.4e-129 466.1 311 69.8
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 2.4e-129 466.1 329 65.7
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 3.1e-129 465.7 329 65.0
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 3.1e-129 465.7 332 66.6
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 4.1e-129 465.3 332 66.6
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 5.3e-129 464.9 346 63.9
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 5.3e-129 464.9 337 65.9
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 5.3e-129 464.9 327 68.2
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 9.1e-129 464.2 352 66.5
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 9.1e-129 464.2 317 68.1
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 9.1e-129 464.2 324 67.6
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.2e-128 463.8 332 67.2
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 2.7e-128 462.6 316 68.0
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.7e-128 462.6 342 64.6
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 4.5e-128 461.8 322 67.4
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 4.5e-128 461.8 319 67.1
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 4.5e-128 461.8 333 67.0
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 5.9e-128 461.5 316 67.1
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 1.0e-127 460.7 340 64.4
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 1.0e-127 460.7 334 64.4
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 1.7e-127 459.9 323 67.2
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 3.8e-127 458.8 329 64.4
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 5.0e-127 458.4 334 64.4
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 6.5e-127 458.0 313 67.1
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 6.5e-127 458.0 350 63.1
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 8.5e-127 457.6 316 67.1
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 1.1e-126 457.2 351 63.5
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 1.1e-126 457.2 346 63.6
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 1.5e-126 456.8 320 68.1
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 4.2e-126 455.3 347 63.4
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 7.2e-126 454.5 336 64.6
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 7.2e-126 454.5 316 66.8
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 9.4e-126 454.1 339 62.5
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 9.4e-126 454.1 316 66.5
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 2.7e-125 452.6 339 63.1
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 6.1e-125 451.4 342 63.7
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 6.1e-125 451.4 352 64.2
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 1.4e-124 450.3 358 62.3
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.0e-124 449.1 321 65.4
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 4.0e-124 448.7 352 62.2
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 5.2e-124 448.4 301 68.1
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 5.2e-124 448.4 337 64.1
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 1.2e-123 447.2 362 61.6
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 1.2e-123 447.2 316 65.2
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.5e-123 446.8 328 65.2
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 3.4e-123 445.7 321 65.1
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 3.4e-123 445.7 356 62.6
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 9.8e-123 444.1 310 67.4
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 1.3e-122 443.7 411 55.2
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 1.7e-122 443.4 300 69.0
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 8.3e-122 441.0 354 60.7
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 1.1e-121 440.7 319 63.6
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 2.4e-121 439.5 353 60.3
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 4.1e-121 438.7 384 58.6
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 9.1e-121 437.6 350 60.9
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 2.0e-120 436.4 346 61.8
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 2.7e-120 436.0 320 64.7
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 2.7e-120 436.0 354 61.6
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 3.5e-120 435.6 337 62.0
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 4.5e-120 435.3 321 63.2
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 5.9e-120 434.9 357 61.9
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.0e-119 434.1 321 62.9
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 1.0e-119 434.1 326 62.0
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 2.2e-119 433.0 335 61.8
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 3.8e-119 432.2 333 62.2
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.1e-118 430.6 321 63.2
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 8.8e-116 421.0 353 58.9
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 2.7e-112 409.5 323 61.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.5e-112 409.1 312 62.8
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 2.5e-110 402.9 275 69.1
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 2.8e-109 399.4 337 58.8
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 6.1e-109 398.3 270 68.9
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 9.8e-107 391.0 282 63.8
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 5.9e-104 381.7 312 59.9
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 8.0e-101 371.3 331 56.2
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 1.2e-99 367.5 319 55.5
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 4.1e-97 359.0 347 53.0
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 1.0e-95 354.4 351 54.4
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 1.0e-95 354.4 309 56.0
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 1.4e-92 344.0 304 56.9
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 2.7e-88 329.7 264 61.4
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 1.7e-87 327.0 297 53.5
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 4.3e-86 322.4 215 68.8
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.2e-77 292.0 226 61.5
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.6e-64 250.8 231 55.0
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.0e-63 246.5 203 59.6
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 7.6e-59 231.9 181 60.8
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 8.4e-58 228.4 200 55.0
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 2.3e-47 193.7 160 51.9
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.9e-46 190.7 145 64.1
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.3e-44 182.6 181 50.3
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.1e-39 166.0 116 65.5
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.7e-39 165.6 115 66.1
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.5e-38 164.5 116 64.7
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 3.3e-38 163.3 108 71.3
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 1.9e-33 147.5 381 28.6
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 6.7e-31 139.0 96 60.4
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 1.7e-29 134.4 129 50.4
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.9e-28 129.0 89 68.5
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.5e-27 127.9 200 40.5
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.1e-25 121.7 329 28.6
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 7.2e-25 119.0 74 74.3
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.0e-18 98.6 65 64.6
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.3e-18 98.2 63 69.8
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 6.1e-16 89.4 70 61.4
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 1.3e-13 81.6 63 61.9
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.6e-11 74.7 71 52.1
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.3e-10 71.6 49 65.3
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.0e-10 69.7 48 64.6
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 3.2e-09 67.0 197 26.9
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 3.6e-08 63.5 40 65.0
Mapoly0012s0022 Marchantia polymorpha HOM05D004444 ORTHO05D005246 1.4e-07 61.6 208 26.0
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 2.3e-07 60.8 53 50.9
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 4.0e-07 60.1 184 26.6
Os08g0152700 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 8.8e-07 58.9 211 28.0
Cc02_g12520 Coffea canephora HOM05D004176 ORTHO05D004845 1.2e-06 58.5 147 29.9
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 1.5e-06 58.2 146 29.5
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 1.5e-06 58.2 146 29.5
CsaV3_5G004820 Cucumis sativus L. HOM05D006112 ORTHO05D007898 2.0e-06 57.8 255 21.6
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 2.6e-06 57.4 43 60.5
MELO3C007311.2 Cucumis melo HOM05D004176 ORTHO05D004845 3.4e-06 57.0 182 27.5
Mapoly0139s0005 Marchantia polymorpha HOM05D004176 ORTHO05D004845 4.4e-06 56.6 179 24.0
Cre10.g448650 Chlamydomonas reinhardtii HOM05D005821 ORTHO05D006649 5.7e-06 56.2 170 26.5
Gohir.D12G199600 Gossypium hirsutum HOM05D006112 ORTHO05D007898 5.7e-06 56.2 135 33.3
Gorai.008G214800 Gossypium raimondii HOM05D006112 ORTHO05D007898 5.7e-06 56.2 135 33.3
Gohir.A12G197000 Gossypium hirsutum HOM05D006112 ORTHO05D007898 7.5e-06 55.8 135 33.3
THA.LOC104806277 Tarenaya hassleriana HOM05D004176 ORTHO05D004845 7.5e-06 55.8 152 32.9
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 9.8e-06 55.5 147 29.9
Sed0004254 Sechium edule HOM05D006112 ORTHO05D007898 9.8e-06 55.5 161 31.1


User provided reference genes

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