Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 9.2e-240 833.2 430 100.0
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 4.1e-139 498.8 425 61.4
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 4.7e-135 485.3 427 59.3
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 3.1e-134 482.6 425 58.8
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 4.4e-133 478.8 439 60.4
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 6.4e-132 474.9 393 61.3
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 9.2e-131 471.1 427 60.2
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 3.5e-130 469.2 421 58.9
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 6.0e-130 468.4 425 58.8
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 1.7e-129 466.8 424 58.0
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 3.0e-129 466.1 408 59.3
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 8.6e-129 464.5 409 61.9
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 2.1e-127 459.9 429 59.2
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 6.2e-127 458.4 429 59.0
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 8.1e-127 458.0 425 58.1
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 4.0e-126 455.7 410 59.3
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 5.2e-126 455.3 390 61.8
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 6.8e-126 454.9 397 60.5
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.2e-125 454.1 379 63.6
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 5.8e-125 451.8 412 59.0
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 1.7e-124 450.3 393 60.1
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 2.2e-124 449.9 408 58.8
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 2.4e-123 446.4 429 57.6
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 3.2e-123 446.0 443 54.2
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 5.4e-123 445.3 443 54.2
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 5.4e-123 445.3 421 57.0
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 9.2e-123 444.5 457 55.6
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.2e-122 444.1 432 55.6
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 7.8e-122 441.4 432 55.8
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 1.3e-121 440.7 432 56.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.3e-121 440.7 429 56.2
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 2.3e-121 439.9 396 58.6
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 2.3e-121 439.9 389 59.4
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 3.0e-121 439.5 416 56.7
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 3.9e-121 439.1 444 53.6
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 5.1e-121 438.7 438 54.3
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.9e-120 436.8 424 56.4
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 5.6e-120 435.3 430 56.0
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 5.6e-120 435.3 436 53.4
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 5.6e-120 435.3 424 56.4
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.6e-119 433.7 442 54.1
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 2.1e-119 433.3 386 59.6
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 4.7e-119 432.2 390 58.5
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 6.2e-119 431.8 387 59.2
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 6.2e-119 431.8 432 54.9
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 6.2e-119 431.8 429 55.9
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 8.1e-119 431.4 441 54.4
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 1.1e-118 431.0 393 58.3
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 1.8e-118 430.3 440 53.2
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 6.8e-118 428.3 443 54.0
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 6.8e-118 428.3 363 60.3
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 6.8e-118 428.3 406 56.9
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 8.9e-118 427.9 399 56.9
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 2.6e-117 426.4 442 53.6
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.2e-116 423.3 421 52.0
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.9e-116 422.9 422 52.1
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 3.8e-116 422.5 423 54.4
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 3.8e-116 422.5 387 57.4
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 4.9e-116 422.2 388 57.2
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 1.1e-115 421.0 430 53.5
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 1.9e-115 420.2 423 54.4
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 4.2e-115 419.1 384 57.0
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 3.5e-114 416.0 423 53.2
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 6.0e-114 415.2 435 53.1
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 7.8e-114 414.8 430 52.8
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 7.8e-114 414.8 415 53.7
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 1.3e-113 414.1 414 53.6
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 1.7e-113 413.7 425 53.4
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 2.3e-113 413.3 422 52.6
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 2.3e-113 413.3 430 53.0
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.9e-113 412.5 392 56.9
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 6.6e-113 411.8 472 51.3
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 6.6e-113 411.8 388 57.0
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 1.1e-112 411.0 442 50.5
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 1.1e-112 411.0 441 51.2
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 1.9e-112 410.2 391 59.1
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 5.6e-112 408.7 365 60.5
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 7.3e-112 408.3 384 56.0
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 9.6e-112 407.9 396 56.3
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 1.3e-111 407.5 430 53.0
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 1.3e-111 407.5 430 53.0
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 2.8e-111 406.4 430 52.1
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 2.8e-111 406.4 430 52.1
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 3.6e-111 406.0 400 55.0
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 6.2e-111 405.2 386 55.7
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.5e-109 400.6 429 52.7
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 1.5e-109 400.6 422 54.3
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.0e-109 400.2 393 57.0
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 2.0e-109 400.2 414 52.2
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 4.9e-108 395.6 398 55.3
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 1.1e-107 394.4 386 56.7
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 4.2e-107 392.5 356 59.6
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 2.1e-106 390.2 378 55.6
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.0e-105 387.9 380 54.7
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.3e-105 387.5 397 54.4
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.5e-104 384.0 421 49.6
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 1.5e-104 384.0 345 58.8
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 3.6e-103 379.4 392 55.4
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 3.1e-102 376.3 340 61.5
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 4.2e-91 339.3 465 44.5
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 3.8e-84 316.2 411 46.2
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.1e-83 314.7 345 49.6
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 1.1e-83 314.7 298 55.0
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 7.7e-77 292.0 396 43.9
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 4.2e-75 286.2 247 59.9
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 7.9e-74 282.0 395 43.0
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 7.9e-74 282.0 395 43.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 5.3e-70 269.2 388 43.0
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.2e-63 247.3 157 77.1
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.0e-41 175.3 378 33.6
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 3.6e-34 150.2 348 33.6
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.5e-32 144.8 126 55.6
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 2.9e-31 140.6 136 53.7
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 6.6e-28 129.4 194 39.7
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 2.9e-23 114.0 115 53.0
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 5.8e-16 89.7 167 35.9
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 5.8e-16 89.7 146 38.4
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 5.2e-09 66.6 235 25.5
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 6.8e-09 66.2 51 60.8
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 6.8e-09 66.2 47 61.7
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 6.8e-09 66.2 47 61.7
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 4.4e-08 63.5 49 59.2
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.3e-07 62.0 90 45.6
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 4.9e-07 60.1 46 60.9


User provided reference genes

Program Settings