Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 9.5e-55 216.9 130 100.0
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 3.9e-48 194.9 130 90.8
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.6e-25 118.2 131 56.5
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 6.0e-25 117.9 131 56.5
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 3.0e-24 115.5 130 57.7
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 5.1e-24 114.8 130 56.9
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.9e-23 112.8 131 49.6
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 3.3e-23 112.1 130 60.0
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 4.3e-23 111.7 129 46.5
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 5.6e-23 111.3 128 52.3
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 9.5e-23 110.5 128 58.6
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-22 110.2 131 47.3
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.2e-22 110.2 131 47.3
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 1.6e-22 109.8 129 58.9
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.6e-22 109.8 128 46.9
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 2.1e-22 109.4 130 43.8
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 4.7e-22 108.2 133 56.4
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 6.2e-22 107.8 129 46.5
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 8.1e-22 107.5 130 45.4
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.8e-21 106.3 129 57.4
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.4e-21 105.9 129 45.7
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.1e-21 105.5 129 45.0
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 4.0e-21 105.1 123 56.9
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 4.0e-21 105.1 129 45.7
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 4.0e-21 105.1 128 41.4
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 5.2e-21 104.8 105 60.0
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 5.2e-21 104.8 105 60.0
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 5.2e-21 104.8 129 46.5
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 8.9e-21 104.0 129 58.1
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.9e-21 104.0 131 45.8
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 8.9e-21 104.0 91 73.6
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.2e-20 103.6 128 45.3
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 1.2e-20 103.6 130 44.6
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 2.6e-20 102.4 99 50.5
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 5.8e-20 101.3 125 52.0
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 1.7e-19 99.8 130 46.2
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.7e-19 99.8 141 39.7
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.7e-19 99.8 131 55.7
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 2.9e-19 99.0 104 62.5
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 2.9e-19 99.0 104 62.5
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.9e-19 99.0 103 61.2
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 4.9e-19 98.2 127 43.3
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 6.4e-19 97.8 88 71.6
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 8.4e-19 97.4 129 55.8
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 8.4e-19 97.4 129 44.2
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.4e-18 96.7 89 53.9
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.9e-18 96.3 129 48.8
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 2.4e-18 95.9 129 45.7
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.2e-18 95.5 118 46.6
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 3.2e-18 95.5 130 41.5
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.2e-18 95.1 127 41.7
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.2e-18 95.1 127 41.7
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 4.2e-18 95.1 130 55.4
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 7.1e-18 94.4 132 43.9
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.2e-17 93.6 132 45.5
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 1.2e-17 93.6 130 53.8
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.6e-17 93.2 85 50.6
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 2.1e-17 92.8 85 68.2
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 2.1e-17 92.8 129 41.9
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 2.1e-17 92.8 129 42.6
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 3.5e-17 92.0 126 42.1
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 3.5e-17 92.0 130 50.0
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.5e-17 92.0 130 50.0
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.5e-17 92.0 128 52.3
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 4.6e-17 91.7 85 67.1
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.6e-17 91.7 85 67.1
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 4.6e-17 91.7 129 41.1
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 4.6e-17 91.7 115 47.0
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 7.8e-17 90.9 85 68.2
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 1.0e-16 90.5 136 50.0
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 1.0e-16 90.5 136 50.0
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 1.3e-16 90.1 131 53.4
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.3e-16 90.1 108 44.4
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.7e-16 89.7 130 50.0
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 1.7e-16 89.7 129 55.0
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 1.7e-16 89.7 113 54.0
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 2.3e-16 89.4 129 50.4
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.3e-16 89.4 131 41.2
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 2.3e-16 89.4 130 51.5
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.3e-16 89.4 128 47.7
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 3.0e-16 89.0 85 65.9
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 5.1e-16 88.2 132 51.5
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.6e-16 87.8 128 39.1
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 8.7e-16 87.4 130 46.2
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 8.7e-16 87.4 136 49.3
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 1.1e-15 87.0 131 41.2
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.1e-15 87.0 94 51.1
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-15 87.0 96 46.9
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 1.5e-15 86.7 85 68.2
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.5e-15 85.9 130 50.0
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 3.3e-15 85.5 116 52.6
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 3.3e-15 85.5 150 37.3
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 4.3e-15 85.1 108 55.6
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 4.3e-15 85.1 130 40.8
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 7.3e-15 84.3 108 52.8
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 9.6e-15 84.0 124 41.9
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 9.6e-15 84.0 127 53.5
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.3e-14 83.6 90 48.9
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 1.3e-14 83.6 78 52.6
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 1.6e-14 83.2 123 47.2
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 1.6e-14 83.2 128 49.2
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 2.8e-14 82.4 130 49.2
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 3.6e-14 82.0 85 65.9
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 3.6e-14 82.0 134 39.6
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 3.6e-14 82.0 129 39.5
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 4.8e-14 81.6 85 65.9
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 4.8e-14 81.6 85 65.9
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 4.8e-14 81.6 129 49.6
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 8.1e-14 80.9 80 50.0
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 1.8e-13 79.7 133 41.4
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.8e-13 79.7 130 44.6
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 2.4e-13 79.3 74 50.0
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 3.1e-13 79.0 122 43.4
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.0e-13 78.6 98 59.2
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 6.9e-13 77.8 132 36.4
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 6.9e-13 77.8 107 41.1
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 6.9e-13 77.8 128 37.5
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 9.0e-13 77.4 130 38.5
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 9.0e-13 77.4 136 38.2
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 9.0e-13 77.4 97 43.3
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.2e-12 77.0 85 61.2
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 1.2e-12 77.0 85 57.6
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.2e-12 77.0 107 50.5
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 1.5e-12 76.6 124 40.3
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.5e-12 76.6 104 44.2
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 1.5e-12 76.6 131 42.7
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 2.0e-12 76.3 130 49.2
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 2.0e-12 76.3 98 45.9
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.6e-12 75.9 102 43.1
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 3.4e-12 75.5 134 38.8
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 4.4e-12 75.1 123 39.0
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 4.4e-12 75.1 62 53.2
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 4.4e-12 75.1 91 59.3
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 5.8e-12 74.7 123 34.1
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 7.6e-12 74.3 125 40.8
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 7.6e-12 74.3 93 45.2
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 7.6e-12 74.3 130 36.2
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 7.6e-12 74.3 94 58.5
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 9.9e-12 73.9 124 46.0
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.9e-12 73.9 84 46.4
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 9.9e-12 73.9 94 55.3
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.3e-11 73.6 85 60.0
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.3e-11 73.6 84 46.4
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.7e-11 73.2 73 49.3
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 2.2e-11 72.8 121 43.8
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 2.9e-11 72.4 123 43.9
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.9e-11 72.4 123 45.5
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.9e-11 72.4 126 50.0
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 4.9e-11 71.6 123 37.4
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 6.4e-11 71.2 69 49.3
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 8.4e-11 70.9 95 52.6
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 8.4e-11 70.9 142 35.2
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 1.1e-10 70.5 123 44.7
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 1.4e-10 70.1 83 61.4
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 1.4e-10 70.1 140 35.7
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.9e-10 69.7 132 34.1
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 1.9e-10 69.7 129 32.6
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.9e-10 69.7 83 61.4
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 3.2e-10 68.9 85 60.0
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 3.2e-10 68.9 91 53.8
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 4.2e-10 68.6 83 61.4
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 5.4e-10 68.2 77 44.2
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 7.1e-10 67.8 68 47.1
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 2.7e-09 65.9 54 55.6
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 4.6e-09 65.1 114 40.4
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 6.0e-09 64.7 127 46.5
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 7.8e-09 64.3 52 57.7
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 1.0e-08 63.9 93 49.5
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.0e-08 63.9 93 49.5
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.0e-08 63.9 93 49.5
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 1.0e-08 63.9 133 43.6
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.0e-08 63.9 59 50.8
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 6.6e-08 61.2 91 41.8
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.3e-07 58.9 51 52.9
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 4.3e-07 58.5 134 32.8
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 9.6e-07 57.4 90 35.6
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 1.3e-06 57.0 59 52.5
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.8e-06 55.8 59 50.8
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 2.8e-06 55.8 57 49.1


User provided reference genes

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