Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 3.2e-207 725.3 514 100.0
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 8.8e-80 302.0 523 53.3
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 4.9e-78 296.2 525 47.6
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.2e-76 291.6 175 84.6
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 3.5e-76 290.0 175 85.1
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 3.5e-76 290.0 175 85.7
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 4.5e-76 289.7 483 60.9
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.3e-75 288.1 186 81.7
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 6.6e-75 285.8 187 79.7
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 8.6e-75 285.4 163 89.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 8.6e-75 285.4 182 83.0
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.1e-74 285.0 198 78.8
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.5e-74 283.9 165 88.5
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.3e-74 283.5 181 82.9
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.6e-74 282.7 176 85.2
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.6e-73 280.0 517 55.7
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 4.7e-73 279.6 179 80.4
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 6.1e-73 279.3 172 84.3
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 8.0e-73 278.9 190 78.4
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.0e-72 278.5 158 88.6
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.0e-72 278.5 165 84.2
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.4e-72 278.1 170 83.5
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.8e-72 277.7 190 75.3
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.3e-72 277.3 188 76.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.0e-72 276.9 489 56.4
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 3.0e-72 276.9 188 78.2
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 3.0e-72 276.9 189 77.2
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 4.0e-72 276.6 190 78.4
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 5.2e-72 276.2 158 88.6
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.2e-72 276.2 163 86.5
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 6.8e-72 275.8 161 87.6
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.2e-71 275.0 177 81.4
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.2e-71 275.0 161 87.0
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.5e-71 274.6 468 59.4
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.0e-71 274.2 190 77.4
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.0e-71 274.2 184 78.3
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 2.6e-71 273.9 468 59.4
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 3.4e-71 273.5 486 47.9
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 5.7e-71 272.7 489 56.4
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 7.5e-71 272.3 184 77.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 9.8e-71 271.9 190 75.8
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.7e-70 271.2 188 78.2
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.7e-70 271.2 172 81.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 2.9e-70 270.4 190 77.4
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.9e-70 270.4 190 77.4
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.9e-70 270.4 479 56.8
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.7e-70 270.0 483 53.8
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 4.9e-70 269.6 195 75.9
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 6.4e-70 269.2 173 80.9
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 8.3e-70 268.9 513 51.1
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 8.3e-70 268.9 183 79.2
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 8.3e-70 268.9 480 63.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.1e-69 268.5 506 54.3
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.4e-69 268.1 497 61.4
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.8e-69 267.7 497 52.1
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 3.2e-69 266.9 163 81.6
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.2e-69 266.9 163 81.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.2e-69 266.9 492 57.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.1e-69 266.5 182 75.8
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 5.4e-69 266.2 476 52.3
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 7.0e-69 265.8 495 54.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 7.0e-69 265.8 534 50.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 7.0e-69 265.8 486 59.9
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 7.0e-69 265.8 493 53.1
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.0e-68 264.2 165 80.0
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 2.0e-68 264.2 499 51.9
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 4.6e-68 263.1 182 74.7
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 5.9e-68 262.7 510 46.1
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 7.8e-68 262.3 516 48.6
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.0e-67 261.9 167 82.6
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.3e-67 261.5 185 75.1
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.7e-67 261.2 182 78.0
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.9e-67 260.0 514 52.1
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 3.9e-67 260.0 174 77.6
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 5.0e-67 259.6 187 73.8
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 8.6e-67 258.8 557 52.1
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.5e-66 258.1 173 75.7
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.9e-66 257.7 174 78.2
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.9e-66 257.7 167 79.6
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.9e-66 257.7 497 50.7
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-66 257.3 178 74.7
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 4.3e-66 256.5 168 77.4
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.6e-66 256.1 177 76.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.6e-66 256.1 177 76.3
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 7.3e-66 255.8 474 48.1
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 9.5e-66 255.4 187 75.4
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.2e-65 255.0 481 57.8
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.6e-65 254.6 157 82.8
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.6e-65 254.6 514 48.2
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.1e-65 254.2 186 74.2
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.1e-65 254.2 483 53.6
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-65 253.8 182 75.8
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 3.6e-65 253.4 522 51.0
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 4.7e-65 253.1 185 74.1
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 4.7e-65 253.1 504 50.6
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 8.0e-65 252.3 169 78.1
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.0e-64 251.9 520 49.4
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.0e-64 251.9 173 76.9
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.3e-64 250.8 187 72.7
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.1e-64 250.4 154 82.5
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.1e-64 250.4 175 77.1
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 8.9e-64 248.8 175 78.3
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.2e-63 248.4 474 57.6
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.5e-63 248.1 482 57.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.0e-63 247.7 520 51.9
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 5.8e-63 246.1 160 78.8
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.3e-62 245.0 172 73.8
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.3e-62 245.0 506 51.2
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.7e-62 244.6 506 53.6
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.2e-62 244.2 498 54.0
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.9e-62 243.8 171 76.6
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 2.9e-62 243.8 519 49.5
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-61 241.9 157 77.7
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.1e-61 241.9 161 78.9
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 4.1e-61 240.0 170 72.4
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 4.1e-61 240.0 470 58.9
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 7.0e-61 239.2 137 85.4
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 7.0e-61 239.2 137 85.4
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-60 237.7 136 85.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-60 237.7 136 85.3
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 2.7e-60 237.3 189 70.4
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.0e-59 235.3 161 75.2
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 6.6e-59 232.6 136 83.8
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 6.6e-59 232.6 133 85.7
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 8.6e-59 232.3 135 84.4
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.1e-58 231.9 507 44.8
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-58 231.5 166 74.1
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 4.3e-58 229.9 133 85.0
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 4.3e-58 229.9 509 52.3
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 9.5e-58 228.8 131 85.5
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 9.5e-58 228.8 158 74.7
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-57 228.4 180 71.1
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 3.6e-57 226.9 135 82.2
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 6.2e-57 226.1 131 84.7
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-56 223.8 133 82.7
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 5.2e-56 223.0 173 71.1
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-55 221.9 132 82.6
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 7.5e-55 219.2 134 84.3
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 8.3e-54 215.7 169 69.2
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 8.3e-54 215.7 169 69.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 6.0e-52 209.5 137 79.6
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.8e-52 209.1 144 76.4
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 5.8e-47 193.0 137 77.4
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 4.9e-46 189.9 180 58.3
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.1e-44 184.5 100 92.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-42 178.7 118 82.2
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 5.6e-42 176.4 156 61.5
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-41 175.3 131 71.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 2.1e-41 174.5 154 66.2
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 5.2e-40 169.9 432 50.9
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 4.4e-39 166.8 105 77.1
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 4.9e-38 163.3 106 77.4
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.3e-35 154.5 164 55.5
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.5e-34 151.0 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 2.4e-32 144.4 100 68.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 6.9e-32 142.9 86 80.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 4.4e-31 140.2 86 79.1
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.2e-29 134.0 70 94.3
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.2e-28 132.1 138 47.8
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-27 127.9 87 71.3
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 6.6e-27 126.3 87 70.1
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.8e-25 120.9 178 44.4
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 5.8e-23 113.2 70 78.6
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.9e-22 110.9 66 80.3
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.4e-21 107.8 98 64.3
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 5.5e-21 106.7 65 78.5
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.6e-20 103.6 190 40.5
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 7.9e-20 102.8 68 75.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.5e-18 97.8 56 87.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.6e-18 96.7 56 85.7
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 9.0e-16 89.4 56 80.4
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.3e-09 68.9 68 52.9
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.4e-08 65.5 93 47.3
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 7.6e-07 59.7 94 44.7


User provided reference genes

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