Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.0e-104 381.7 176 100.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.6e-84 316.2 259 64.1
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.6e-71 272.3 243 58.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-59 232.6 259 47.1
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 5.0e-59 231.5 259 46.3
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.9e-58 229.6 244 48.8
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 3.3e-58 228.8 249 47.0
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.6e-57 226.5 257 47.5
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 3.6e-57 225.3 234 50.0
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 4.7e-57 224.9 250 46.8
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 4.7e-57 224.9 233 49.8
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 4.7e-57 224.9 236 50.0
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 6.1e-57 224.6 247 47.8
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 8.0e-57 224.2 250 46.8
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.0e-56 223.8 233 49.4
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.8e-56 223.0 250 46.8
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.8e-56 223.0 248 45.6
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.3e-56 222.6 248 47.2
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 3.0e-56 222.2 233 48.5
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 6.8e-56 221.1 238 48.3
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 6.8e-56 221.1 233 48.9
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 8.9e-56 220.7 231 49.8
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.5e-55 219.9 233 49.8
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.5e-55 219.9 232 49.1
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.6e-55 219.2 233 47.2
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.4e-55 218.8 210 52.9
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.4e-55 218.4 231 48.1
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 5.7e-55 218.0 233 48.9
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 9.8e-55 217.2 234 47.9
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 9.8e-55 217.2 234 47.4
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.7e-54 216.5 249 46.2
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.7e-54 216.5 230 48.7
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.2e-54 216.1 232 49.1
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.9e-54 215.7 233 48.1
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.9e-54 215.7 232 47.8
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 4.9e-54 214.9 233 47.6
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.4e-54 214.5 234 47.9
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 6.4e-54 214.5 234 47.9
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 8.3e-54 214.2 257 44.0
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 8.3e-54 214.2 229 48.0
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 8.3e-54 214.2 232 46.6
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 8.3e-54 214.2 234 47.0
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-53 213.8 231 48.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.1e-53 213.8 231 48.1
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.4e-53 213.4 247 45.3
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.8e-53 213.0 255 44.3
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.8e-53 213.0 249 45.0
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.8e-53 213.0 249 45.0
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.8e-53 213.0 233 46.8
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.4e-53 212.6 229 47.2
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.4e-53 212.6 234 47.0
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.4e-53 212.6 234 47.4
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 2.4e-53 212.6 232 47.0
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.2e-53 212.2 232 48.3
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 4.1e-53 211.8 249 44.6
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 4.1e-53 211.8 237 46.0
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 4.1e-53 211.8 245 45.7
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 5.4e-53 211.5 234 47.4
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 7.0e-53 211.1 228 47.8
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.0e-53 211.1 260 43.8
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 7.0e-53 211.1 233 47.6
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 9.2e-53 210.7 249 44.6
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 9.2e-53 210.7 232 47.4
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 9.2e-53 210.7 231 46.3
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 9.2e-53 210.7 231 46.3
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.2e-52 210.3 232 47.4
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.2e-52 210.3 230 45.7
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.2e-52 210.3 239 46.4
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.2e-52 210.3 234 47.9
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.6e-52 209.9 232 47.4
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.6e-52 209.9 232 47.4
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.7e-52 209.1 233 46.8
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.7e-52 209.1 236 47.5
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 3.5e-52 208.8 228 47.4
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 3.5e-52 208.8 228 47.4
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 3.5e-52 208.8 235 45.1
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.5e-52 208.8 232 46.1
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 3.5e-52 208.8 228 48.2
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 3.5e-52 208.8 230 47.0
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 4.6e-52 208.4 232 46.6
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 5.9e-52 208.0 234 47.4
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 5.9e-52 208.0 258 44.6
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 5.9e-52 208.0 235 45.1
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 5.9e-52 208.0 234 46.6
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.9e-52 208.0 230 47.0
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 7.8e-52 207.6 232 47.0
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.0e-51 207.2 251 43.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.0e-51 207.2 230 47.0
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.3e-51 206.8 235 46.0
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.3e-51 206.8 232 47.0
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-51 206.8 230 46.5
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 1.3e-51 206.8 232 46.1
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.7e-51 206.5 233 45.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.3e-51 206.1 230 46.5
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.3e-51 206.1 230 45.7
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 3.9e-51 205.3 236 46.2
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.0e-51 204.9 235 46.0
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 6.6e-51 204.5 232 46.1
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.6e-51 204.1 230 46.5
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.1e-50 203.8 232 46.6
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-50 203.8 232 46.6
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.1e-50 203.8 247 43.3
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 1.1e-50 203.8 251 42.6
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 1.1e-50 203.8 225 46.2
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.5e-50 203.4 232 45.7
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.5e-50 203.4 246 43.9
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.5e-50 203.4 246 43.9
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.9e-50 203.0 228 45.2
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 4.3e-50 201.8 231 44.2
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 4.3e-50 201.8 232 45.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 5.6e-50 201.4 232 44.8
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 7.3e-50 201.1 230 46.1
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 9.5e-50 200.7 230 45.7
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 9.5e-50 200.7 230 45.2
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 9.5e-50 200.7 229 44.5
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 9.5e-50 200.7 232 44.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 9.5e-50 200.7 230 44.8
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 9.5e-50 200.7 229 46.3
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.2e-49 200.3 228 46.1
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.2e-49 200.3 225 46.7
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.2e-49 200.3 230 46.1
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.6e-49 199.9 229 44.5
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 2.1e-49 199.5 257 40.1
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.1e-49 199.5 230 44.3
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.8e-49 199.1 230 44.8
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 3.6e-49 198.7 244 43.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.0e-49 197.6 236 44.1
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 1.4e-48 196.8 226 44.7
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 1.8e-48 196.4 231 43.3
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 3.1e-48 195.7 228 43.4
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.5e-47 193.4 232 44.0
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.0e-47 193.0 233 43.3
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 5.8e-47 191.4 226 45.1
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 7.5e-47 191.0 248 41.5
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 9.8e-47 190.7 236 41.1
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.7e-46 189.9 230 42.2
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.7e-46 189.9 228 43.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 4.9e-46 188.3 225 43.1
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 8.3e-46 187.6 227 43.2
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.4e-45 186.8 236 40.3
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.2e-44 183.7 241 40.2
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 2.7e-44 182.6 230 41.3
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.3e-43 179.5 227 41.0
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.3e-43 179.5 228 39.5
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.5e-42 176.0 230 39.1
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 7.3e-42 174.5 235 38.7
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 8.1e-41 171.0 212 43.4
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 2.3e-40 169.5 239 36.4
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 4.1e-37 158.7 222 39.6
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.6e-36 156.8 228 43.0
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 3.5e-36 155.6 227 39.2
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.0e-35 154.1 226 38.1
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.2e-31 140.6 93 67.7
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 2.0e-31 139.8 86 67.4
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.3e-30 137.1 87 67.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.0e-27 127.5 80 76.2
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 3.3e-18 95.9 216 30.1
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 4.3e-18 95.5 63 61.9
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.9e-13 80.1 178 29.2
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.9e-13 80.1 93 47.3
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 4.6e-12 75.5 51 58.8


User provided reference genes

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