Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 8.8e-131 470.3 242 100.0
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 6.2e-84 314.7 188 87.2
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.1e-55 218.4 210 57.1
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 3.9e-54 215.7 204 59.3
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 5.1e-54 215.3 204 59.3
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 6.7e-54 214.9 205 59.0
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 9.7e-53 211.1 204 60.3
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 1.3e-52 210.7 202 59.4
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 2.8e-52 209.5 214 56.5
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 2.4e-51 206.5 209 56.5
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.1e-51 206.1 207 55.6
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 5.3e-51 205.3 204 56.4
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 9.0e-51 204.5 204 56.4
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.5e-50 203.8 204 56.4
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.5e-50 203.8 205 55.6
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.5e-50 203.8 204 56.4
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.0e-50 203.4 204 55.9
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 3.4e-50 202.6 218 52.8
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.5e-50 202.2 204 55.9
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 4.5e-50 202.2 209 53.1
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.0e-49 201.1 207 53.6
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.3e-49 200.7 211 55.9
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.3e-49 200.7 206 56.3
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 2.2e-49 199.9 209 57.9
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 2.2e-49 199.9 219 54.8
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 2.2e-49 199.9 208 59.1
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.2e-49 199.9 208 53.8
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 3.8e-49 199.1 219 53.9
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 3.8e-49 199.1 205 53.7
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 3.8e-49 199.1 209 56.5
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 6.5e-49 198.4 207 53.1
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 6.5e-49 198.4 208 53.4
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 8.5e-49 198.0 208 55.3
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 8.5e-49 198.0 206 53.9
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.1e-48 197.6 206 54.9
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 1.1e-48 197.6 209 52.6
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 1.1e-48 197.6 211 55.9
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.4e-48 197.2 205 53.7
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 1.9e-48 196.8 207 55.1
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 1.9e-48 196.8 205 54.6
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.9e-48 196.8 207 52.7
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 2.5e-48 196.4 211 54.5
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 2.5e-48 196.4 205 54.1
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 4.2e-48 195.7 209 54.1
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 4.2e-48 195.7 207 55.6
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 9.4e-48 194.5 222 51.4
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.2e-47 194.1 207 54.1
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 1.6e-47 193.7 208 55.3
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 1.6e-47 193.7 205 55.1
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 1.6e-47 193.7 212 53.3
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 2.1e-47 193.4 209 55.5
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 2.1e-47 193.4 211 54.0
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 2.1e-47 193.4 209 53.6
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.1e-47 193.4 207 55.1
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.7e-47 193.0 209 55.5
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.7e-47 193.0 207 51.7
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 3.6e-47 192.6 205 53.7
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 6.1e-47 191.8 202 55.0
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 6.1e-47 191.8 216 54.2
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 6.1e-47 191.8 209 53.6
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.1e-47 191.8 213 52.6
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 7.9e-47 191.4 206 55.3
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 1.0e-46 191.0 207 53.1
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 1.0e-46 191.0 209 53.6
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 1.0e-46 191.0 223 49.8
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 1.4e-46 190.7 208 54.3
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 1.4e-46 190.7 206 53.4
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.4e-46 190.7 206 55.3
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 1.8e-46 190.3 209 51.7
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 2.3e-46 189.9 238 49.2
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 2.3e-46 189.9 202 55.4
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 3.0e-46 189.5 206 54.4
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 5.1e-46 188.7 211 52.1
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 6.7e-46 188.3 207 50.7
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 8.8e-46 188.0 219 51.1
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.1e-45 187.6 207 52.7
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 1.5e-45 187.2 210 51.4
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 1.5e-45 187.2 204 55.4
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.7e-45 185.3 209 55.0
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.7e-45 185.3 209 55.0
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 7.4e-45 184.9 207 54.6
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 9.7e-45 184.5 206 52.4
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 1.3e-44 184.1 233 47.6
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.3e-44 184.1 209 51.7
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 2.2e-44 183.3 210 52.9
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.8e-44 183.0 208 50.0
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 3.7e-44 182.6 208 51.4
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 3.7e-44 182.6 207 51.2
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 4.8e-44 182.2 209 50.7
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 4.8e-44 182.2 218 52.8
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 4.8e-44 182.2 215 51.6
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.1e-43 181.0 207 49.3
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.1e-43 181.0 208 50.5
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 1.1e-43 181.0 277 43.7
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 1.4e-43 180.6 211 50.2
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 1.4e-43 180.6 212 52.8
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 1.8e-43 180.3 210 50.5
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.4e-43 179.9 203 50.7
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 3.1e-43 179.5 212 49.5
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 3.1e-43 179.5 220 50.9
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 5.3e-43 178.7 207 49.8
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 6.9e-43 178.3 214 49.1
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 6.9e-43 178.3 252 46.4
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 9.1e-43 177.9 207 50.2
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 9.1e-43 177.9 248 47.6
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 1.2e-42 177.6 207 50.2
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.2e-42 177.6 213 49.8
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.2e-42 177.6 211 51.7
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 2.0e-42 176.8 204 50.0
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 5.9e-42 175.3 207 49.8
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 7.7e-42 174.9 183 55.7
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.7e-41 173.7 206 50.0
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 2.9e-41 172.9 207 49.3
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 3.8e-41 172.6 206 48.5
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-40 171.0 179 52.5
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 1.4e-40 170.6 184 52.7
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 1.9e-40 170.2 212 48.1
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 5.5e-40 168.7 204 48.0
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 1.2e-39 167.5 181 53.6
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.3e-38 163.3 184 50.5
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 3.9e-38 162.5 243 44.9
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 6.7e-38 161.8 206 46.6
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 1.1e-37 161.0 183 50.3
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.3e-37 159.5 167 53.3
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.3e-37 159.5 167 53.3
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.3e-37 159.5 167 53.3
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.4e-37 158.3 204 46.6
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.2e-36 156.8 178 52.2
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.8e-36 156.4 242 44.6
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 2.8e-36 156.4 205 45.4
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.7e-36 156.0 183 48.1
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 6.3e-36 155.2 170 53.5
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 1.1e-35 154.5 207 44.9
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 1.8e-35 153.7 211 47.4
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 2.4e-35 153.3 174 54.6
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 4.1e-35 152.5 208 46.6
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 1.2e-34 151.0 185 49.2
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.6e-34 150.6 211 44.5
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 2.2e-33 146.7 207 44.9
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 1.1e-32 144.4 207 44.0
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 1.1e-32 144.4 180 48.3
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 7.2e-32 141.7 180 47.2
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 9.4e-32 141.4 183 46.4
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.7e-31 139.0 163 53.4
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 6.1e-31 138.7 293 35.5
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.2e-30 135.6 162 53.7
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 6.7e-30 135.2 207 43.0
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 8.8e-30 134.8 212 40.6
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 1.3e-28 131.0 189 46.6
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 2.8e-28 129.8 161 52.2
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 1.4e-27 127.5 125 58.4
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 5.3e-27 125.6 237 38.8
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.1e-27 124.8 208 38.9
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 4.5e-26 122.5 207 37.7
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.2e-23 114.4 158 45.6
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 8.0e-23 111.7 158 44.3
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 3.0e-22 109.8 163 39.9
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.2e-22 109.0 191 40.8
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 2.6e-21 106.7 174 44.3
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 2.6e-21 106.7 146 44.5
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 4.4e-21 105.9 234 33.3
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 5.7e-21 105.5 200 40.0
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.7e-20 102.8 220 35.0
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 7.0e-19 98.6 220 32.7
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.3e-17 94.4 107 53.3
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 1.7e-17 94.0 119 49.6
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 6.5e-17 92.0 229 32.8
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 1.1e-16 91.3 83 57.8
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 1.9e-16 90.5 130 50.0
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 7.2e-16 88.6 110 46.4
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 9.4e-16 88.2 75 58.7
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-15 87.8 110 46.4
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-15 87.8 110 46.4
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.0e-14 83.2 70 54.3
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 3.0e-14 83.2 150 40.7
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 4.4e-13 79.3 60 71.7
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.4e-11 74.3 153 38.6
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 1.3e-09 67.8 53 62.3
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.9e-09 66.6 49 73.5
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 3.8e-09 66.2 72 50.0
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 8.6e-09 65.1 182 32.4
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-08 64.3 64 54.7
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 1.5e-08 64.3 49 69.4
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 9.5e-08 61.6 165 34.5
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 8.0e-07 58.5 179 29.6
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 8.9e-06 55.1 123 37.4


User provided reference genes

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