Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.1e-65 251.1 118 100.0
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.3e-31 139.0 132 56.1
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.8e-29 132.1 128 55.5
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 7.9e-16 87.4 115 45.2
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 6.7e-15 84.3 133 37.6
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 6.7e-15 84.3 130 45.4
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 6.7e-15 84.3 117 44.4
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 1.1e-14 83.6 109 43.1
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 1.1e-14 83.6 110 43.6
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.5e-14 83.2 112 42.9
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.5e-14 83.2 118 41.5
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 1.9e-14 82.8 113 42.5
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-14 82.8 113 42.5
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 2.5e-14 82.4 112 42.0
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.5e-14 82.4 112 42.9
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 3.3e-14 82.0 112 42.0
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 3.3e-14 82.0 112 42.0
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 3.3e-14 82.0 111 43.2
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 3.3e-14 82.0 112 42.0
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 3.3e-14 82.0 112 42.0
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 3.3e-14 82.0 112 42.0
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 3.3e-14 82.0 112 42.0
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 3.3e-14 82.0 117 42.7
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 4.3e-14 81.6 121 39.7
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 4.3e-14 81.6 116 43.1
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 5.6e-14 81.3 111 42.3
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 7.4e-14 80.9 117 41.0
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 9.6e-14 80.5 120 41.7
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 1.3e-13 80.1 115 40.9
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 1.3e-13 80.1 129 40.3
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.6e-13 79.7 112 40.2
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.6e-13 79.7 110 40.9
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.6e-13 79.7 115 40.9
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.6e-13 79.7 121 41.3
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.1e-13 79.3 114 41.2
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 2.1e-13 79.3 109 44.0
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 2.1e-13 79.3 137 40.1
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 2.1e-13 79.3 112 42.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.1e-13 79.3 110 42.7
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.8e-13 79.0 120 36.7
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 3.7e-13 78.6 112 40.2
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 3.7e-13 78.6 115 41.7
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 3.7e-13 78.6 107 42.1
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 4.8e-13 78.2 115 40.9
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 4.8e-13 78.2 123 39.8
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 4.8e-13 78.2 110 40.0
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.1e-12 77.0 107 40.2
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.4e-12 76.6 124 40.3
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.4e-12 76.6 121 38.8
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 2.4e-12 75.9 121 38.8
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 4.0e-12 75.1 107 42.1
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 6.9e-12 74.3 119 41.2
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 6.9e-12 74.3 119 39.5
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 6.9e-12 74.3 107 38.3
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 6.9e-12 74.3 122 39.3
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 1.2e-11 73.6 107 42.1
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.2e-11 73.6 107 41.1
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 3.4e-11 72.0 132 38.6
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 3.8e-10 68.6 105 38.1
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 3.8e-10 68.6 109 35.8
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 4.9e-10 68.2 111 36.9
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 8.4e-10 67.4 114 38.6
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 8.4e-10 67.4 105 36.2
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 4.2e-09 65.1 124 32.3
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 9.3e-09 63.9 98 39.8
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 9.3e-09 63.9 98 39.8
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 9.3e-09 63.9 124 33.1
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.2e-08 63.5 111 35.1
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-08 63.5 111 33.3
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.2e-08 63.5 100 36.0
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 2.1e-08 62.8 118 35.6
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 2.3e-07 59.3 100 34.0
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 2.3e-07 59.3 113 33.6
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.3e-07 59.3 112 34.8
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 3.9e-07 58.5 44 61.4
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 5.1e-07 58.2 45 55.6
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 6.7e-07 57.8 100 33.0
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 6.7e-07 57.8 100 34.0
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 6.7e-07 57.8 100 33.0
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 6.7e-07 57.8 43 55.8
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 6.7e-07 57.8 43 55.8
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 8.7e-07 57.4 35 71.4
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.1e-06 57.0 35 68.6
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.1e-06 57.0 35 68.6
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.1e-06 57.0 35 68.6
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.1e-06 57.0 34 70.6
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 1.1e-06 57.0 44 54.5
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.5e-06 56.6 35 68.6
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 1.5e-06 56.6 36 66.7
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 2.5e-06 55.8 43 53.5
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 3.3e-06 55.5 33 66.7
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 3.3e-06 55.5 43 60.5
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 4.3e-06 55.1 35 62.9
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 4.3e-06 55.1 42 59.5
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 4.3e-06 55.1 39 66.7
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 5.6e-06 54.7 36 61.1
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 7.4e-06 54.3 36 66.7
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 9.6e-06 53.9 34 64.7
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 9.6e-06 53.9 37 62.2
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 9.6e-06 53.9 37 62.2
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 9.6e-06 53.9 37 59.5


User provided reference genes

Program Settings