Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 1.1e-56 223.0 107 100.0
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 4.3e-45 184.5 91 95.6
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 6.0e-31 137.5 98 65.3
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 7.8e-31 137.1 94 69.1
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.5e-29 132.9 95 65.3
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.9e-29 132.5 110 57.3
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 4.3e-29 131.3 91 65.9
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 2.8e-28 128.6 99 62.6
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 4.8e-28 127.9 102 58.8
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 6.2e-28 127.5 94 61.7
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 6.2e-28 127.5 106 57.5
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 2.4e-27 125.6 100 58.0
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 3.1e-27 125.2 93 58.1
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 4.0e-27 124.8 108 55.6
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 4.0e-27 124.8 95 63.2
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 4.0e-27 124.8 90 61.1
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 5.3e-27 124.4 92 62.0
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 5.3e-27 124.4 94 62.8
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 5.3e-27 124.4 94 62.8
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 5.3e-27 124.4 104 58.7
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 5.3e-27 124.4 104 58.7
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 5.3e-27 124.4 97 58.8
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 5.3e-27 124.4 90 61.1
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 6.9e-27 124.0 96 61.5
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 6.9e-27 124.0 99 56.6
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 9.0e-27 123.6 97 61.9
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 9.0e-27 123.6 104 58.7
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.2e-26 123.2 98 55.1
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 1.2e-26 123.2 100 57.0
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 1.2e-26 123.2 92 60.9
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 1.2e-26 123.2 104 58.7
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 1.5e-26 122.9 98 61.2
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 2.0e-26 122.5 111 51.4
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 2.0e-26 122.5 96 62.5
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 2.6e-26 122.1 97 57.7
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 2.6e-26 122.1 92 64.1
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 3.4e-26 121.7 91 59.3
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 3.4e-26 121.7 88 62.5
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 4.5e-26 121.3 107 54.2
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 4.5e-26 121.3 110 54.5
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 4.5e-26 121.3 89 62.9
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 4.5e-26 121.3 100 56.0
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 5.8e-26 120.9 89 59.6
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 5.8e-26 120.9 105 56.2
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 7.6e-26 120.6 108 54.6
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 9.9e-26 120.2 108 54.6
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 9.9e-26 120.2 97 60.8
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 9.9e-26 120.2 89 61.8
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 1.3e-25 119.8 95 57.9
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.3e-25 119.8 91 59.3
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.3e-25 119.8 88 61.4
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.3e-25 119.8 88 61.4
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 1.3e-25 119.8 91 58.2
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.7e-25 119.4 88 60.2
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 1.7e-25 119.4 103 57.3
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 1.7e-25 119.4 97 56.7
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 1.7e-25 119.4 100 56.0
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 1.7e-25 119.4 90 60.0
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 2.2e-25 119.0 91 59.3
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 2.9e-25 118.6 100 56.0
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 2.9e-25 118.6 109 53.2
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 2.9e-25 118.6 109 53.2
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 2.9e-25 118.6 97 57.7
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 3.8e-25 118.2 99 57.6
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 3.8e-25 118.2 95 58.9
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 3.8e-25 118.2 94 58.5
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 3.8e-25 118.2 104 54.8
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 4.9e-25 117.9 95 58.9
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 6.4e-25 117.5 103 53.4
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 6.4e-25 117.5 89 58.4
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 8.4e-25 117.1 96 58.3
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 8.4e-25 117.1 96 57.3
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 1.1e-24 116.7 107 53.3
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 1.1e-24 116.7 92 60.9
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.1e-24 116.7 94 58.5
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 1.4e-24 116.3 107 53.3
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 1.4e-24 116.3 109 51.4
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 1.4e-24 116.3 103 53.4
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 1.9e-24 115.9 101 57.4
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.9e-24 115.9 106 51.9
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 2.4e-24 115.5 85 57.6
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 2.4e-24 115.5 107 56.1
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 3.2e-24 115.2 93 59.1
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.2e-24 114.8 94 57.4
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 4.2e-24 114.8 97 55.7
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 5.4e-24 114.4 107 52.3
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 5.4e-24 114.4 94 56.4
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 7.1e-24 114.0 116 50.0
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 7.1e-24 114.0 99 56.6
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 9.3e-24 113.6 96 56.2
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 1.2e-23 113.2 107 52.3
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.2e-23 113.2 88 56.8
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.2e-23 113.2 102 56.9
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.6e-23 112.8 99 55.6
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 2.1e-23 112.5 94 59.6
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 3.5e-23 111.7 107 52.3
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 3.5e-23 111.7 95 57.9
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 3.5e-23 111.7 91 60.4
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 6.0e-23 110.9 110 51.8
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 6.0e-23 110.9 110 51.8
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 6.0e-23 110.9 110 51.8
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 6.0e-23 110.9 110 51.8
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 6.0e-23 110.9 110 51.8
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 6.0e-23 110.9 110 51.8
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 1.0e-22 110.2 125 44.8
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.0e-22 110.2 94 51.1
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 1.3e-22 109.8 110 51.8
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 1.8e-22 109.4 105 53.3
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 1.8e-22 109.4 110 50.9
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 3.9e-22 108.2 110 50.0
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 5.1e-22 107.8 110 49.1
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 5.1e-22 107.8 111 47.7
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 6.7e-22 107.5 110 49.1
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 8.7e-22 107.1 110 49.1
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 8.7e-22 107.1 110 49.1
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 8.7e-22 107.1 110 49.1
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.1e-21 106.7 107 49.5
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 2.5e-21 105.5 91 57.1
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 3.3e-21 105.1 91 49.5
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 4.3e-21 104.8 110 48.2
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 9.6e-21 103.6 108 49.1
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 2.8e-20 102.1 103 49.5
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.8e-19 99.4 107 45.8
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 9.0e-19 97.1 120 41.7
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 6.4e-17 90.9 120 39.2
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 7.9e-15 84.0 91 46.2
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 1.3e-12 76.6 47 70.2
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 2.8e-12 75.5 43 74.4
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 2.8e-12 75.5 97 40.2
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 4.8e-12 74.7 90 41.1
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 5.3e-11 71.2 42 71.4
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 1.5e-10 69.7 44 68.2
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 2.6e-10 68.9 42 69.0
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 3.4e-10 68.6 43 74.4
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 4.5e-10 68.2 44 68.2
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 7.6e-10 67.4 80 37.5
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 7.1e-08 60.8 37 64.9
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 3.9e-06 55.1 88 33.0


User provided reference genes

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