Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1578 Ceratophyllum demersum HOM05D000554 ORTHO05D002829 8.3e-41 169.9 81 100.0
CDE02G2846 Ceratophyllum demersum HOM05D000554 ORTHO05D002829 1.1e-16 89.7 47 97.9
CDE04G1954 Ceratophyllum demersum HOM05D000554 ORTHO05D002829 7.0e-16 87.0 48 91.7
TAR381G0018 Trochodendron aralioides HOM05D000554 ORTHO05D002829 2.2e-09 65.5 49 71.4
Dinv36029 Davidia involucrata HOM05D000554 ORTHO05D002829 4.9e-09 64.3 49 65.3
Lj3g0002762 Lotus japonicus HOM05D000554 ORTHO05D002829 8.3e-09 63.5 48 66.7
Nn1g05131 Nelumbo nucifera HOM05D000554 ORTHO05D002829 8.3e-09 63.5 48 66.7
TAR625G0370 Trochodendron aralioides HOM05D000554 ORTHO05D002829 1.1e-08 63.2 48 66.7
Aqoxy5G01731 Aquilegia oxysepala HOM05D000554 ORTHO05D002829 1.9e-08 62.4 56 57.1
Hma1.2p1_0260F.1_g104340 Hydrangea macrophylla HOM05D000554 ORTHO05D002829 1.9e-08 62.4 49 63.3
MBI16_g10971_MAGBIO Magnolia biondii HOM05D000554 ORTHO05D002829 1.9e-08 62.4 51 64.7
MD05G1071700 Malus domestica HOM05D000554 ORTHO05D002829 1.9e-08 62.4 48 68.8
MD10G1083500 Malus domestica HOM05D000554 ORTHO05D002829 1.9e-08 62.4 49 63.3
VMungo1127G1515 Vigna mungo HOM05D000554 ORTHO05D002829 1.9e-08 62.4 48 66.7
PSO170G6657 Papaver somniferum HOM05D000554 ORTHO05D002829 2.4e-08 62.0 43 72.1
PSO700G0387 Papaver somniferum HOM05D000554 ORTHO05D002829 2.4e-08 62.0 43 72.1
Lj9A697T52 Lonicera japonica HOM05D000554 ORTHO05D002829 3.2e-08 61.6 48 64.6
Phvul.011G048200 Phaseolus vulgaris HOM05D000554 ORTHO05D002829 3.2e-08 61.6 48 64.6
Nn5g29467 Nelumbo nucifera HOM05D000554 ORTHO05D002829 4.1e-08 61.2 47 72.3
RcHm_v2.0_Chr6g0262251 Rosa chinensis HOM05D000554 ORTHO05D002829 4.1e-08 61.2 48 68.8
arahy.Tifrunner.gnm1.ann1.8MWJ6S Arachis hypogaea HOM05D000554 ORTHO05D002829 5.4e-08 60.8 48 62.5
arahy.Tifrunner.gnm1.ann1.PF3UPC Arachis hypogaea HOM05D000554 ORTHO05D002829 5.4e-08 60.8 48 62.5
arahy.Tifrunner.gnm1.ann1.QPH9KH Arachis hypogaea HOM05D000554 ORTHO05D002829 5.4e-08 60.8 48 62.5
THA.LOC104804362 Tarenaya hassleriana HOM05D000554 ORTHO05D002829 5.4e-08 60.8 48 62.5
Dinv23562 Davidia involucrata HOM05D000554 ORTHO05D002829 7.1e-08 60.5 48 68.8
SEGI_09138 Sequoiadendron giganteum HOM05D000554 ORTHO05D002829 7.1e-08 60.5 47 68.1
TWI31G0588 Tripterygium wilfordii HOM05D000554 ORTHO05D002829 7.1e-08 60.5 48 64.6
Atru.chr5.2921 Acer truncatum HOM05D000554 ORTHO05D002829 9.2e-08 60.1 47 70.2
QL02p007199 Quercus lobata HOM05D000554 ORTHO05D002829 9.2e-08 60.1 54 57.4
vmacro21602 Vaccinium macrocarpon HOM05D000554 ORTHO05D002829 9.2e-08 60.1 49 65.3
GSVIVG01031904001 Vitis vinifera HOM05D000554 ORTHO05D002829 9.2e-08 60.1 48 68.8
Glyma.12G046400 Glycine max HOM05D000554 ORTHO05D002829 1.2e-07 59.7 48 62.5
Lalb_Chr01g0002801 Lupinus albus HOM05D000554 ORTHO05D002829 1.2e-07 59.7 49 59.2
Manes.15G147400 Manihot esculenta HOM05D000554 ORTHO05D002829 1.2e-07 59.7 47 70.2
Manes.17G098600 Manihot esculenta HOM05D000554 ORTHO05D002829 1.2e-07 59.7 47 70.2
Cc02_g17990 Coffea canephora HOM05D000554 ORTHO05D002829 1.6e-07 59.3 48 64.6
Dinv42098 Davidia involucrata HOM05D000554 ORTHO05D002829 1.6e-07 59.3 49 67.3
HanXRQChr03g0071071 Helianthus annuus HOM05D000554 ORTHO05D002829 1.6e-07 59.3 48 64.6
TPR.G28048 Trifolium pratense HOM05D000554 ORTHO05D002829 1.6e-07 59.3 49 57.1
Cfa018453 Carpinus fangiana HOM05D000554 ORTHO05D002829 2.1e-07 58.9 54 57.4
Haze_17613 Corylus avellana HOM05D000554 ORTHO05D002829 2.1e-07 58.9 54 57.4
DCAR_022089 Daucus carota HOM05D000554 ORTHO05D002829 2.1e-07 58.9 51 62.7
Rhsim06G0038500 Rhododendron simsii HOM05D000554 ORTHO05D002829 2.1e-07 58.9 49 61.2
CSS0003037 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D002829 2.7e-07 58.5 57 56.1
CSS0009824 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D002829 2.7e-07 58.5 57 56.1
Ciclev10000795m.g Citrus clementina HOM05D000554 ORTHO05D002829 2.7e-07 58.5 47 66.0
COL.COLO4_17798 Corchorus olitorius HOM05D000554 ORTHO05D002829 2.7e-07 58.5 47 68.1
Glyma.11G121300 Glycine max HOM05D000554 ORTHO05D002829 2.7e-07 58.5 48 62.5
Ah.11g043180 Amaranthus hybridus HOM05D000554 ORTHO05D002829 3.5e-07 58.2 56 51.8
CiPaw.05G060400 Carya illinoinensis HOM05D000554 ORTHO05D002829 3.5e-07 58.2 48 66.7
Duzib132G0892 Durio zibethinus HOM05D000554 ORTHO05D002829 3.5e-07 58.2 47 68.1
Eucgr.I01239 Eucalyptus grandis HOM05D000554 ORTHO05D002829 3.5e-07 58.2 47 68.1
Thhalv10024727m.g Eutrema salsugineum HOM05D000554 ORTHO05D002829 3.5e-07 58.2 50 60.0
Gorai.012G163300 Gossypium raimondii HOM05D000554 ORTHO05D002829 3.5e-07 58.2 47 68.1
Sabra09G0084800 Salix brachista HOM05D000554 ORTHO05D002829 3.5e-07 58.2 48 68.8
Sp7g32160 Schrenkiella parvula HOM05D000554 ORTHO05D002829 3.5e-07 58.2 50 60.0
Thecc.02G031500 Theobroma cacao HOM05D000554 ORTHO05D002829 3.5e-07 58.2 47 68.1
unitig_744.g24244 Utricularia gibba HOM05D000554 ORTHO05D002829 3.5e-07 58.2 47 63.8
GSVIVG01009627001 Vitis vinifera HOM05D000554 ORTHO05D002829 3.5e-07 58.2 48 64.6
Actinidia00493 Actinidia chinensis HOM05D000554 ORTHO05D002829 4.6e-07 57.8 58 58.6
Cfa004970 Carpinus fangiana HOM05D000554 ORTHO05D002829 4.6e-07 57.8 48 64.6
Ca_20839_v3 Cicer arietinum L. HOM05D000554 ORTHO05D002829 4.6e-07 57.8 47 61.7
Gohir.A04G128800 Gossypium hirsutum HOM05D000554 ORTHO05D002829 4.6e-07 57.8 47 68.1
Gohir.D04G173900 Gossypium hirsutum HOM05D000554 ORTHO05D002829 4.6e-07 57.8 47 68.1
ATR0733G206 Amborella trichopoda HOM05D000554 ORTHO05D002829 6.0e-07 57.4 44 63.6
CSS0014904 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D002829 6.0e-07 57.4 46 65.2
Ciclev10028072m.g Citrus clementina HOM05D000554 ORTHO05D002829 6.0e-07 57.4 45 71.1
Haze_02426 Corylus avellana HOM05D000554 ORTHO05D002829 6.0e-07 57.4 48 64.6
ECA240G1058 Erigeron canadensis HOM05D000554 ORTHO05D002829 6.0e-07 57.4 45 66.7
Lalb_Chr19g0138531 Lupinus albus HOM05D000554 ORTHO05D002829 6.0e-07 57.4 49 59.2
Medtr4g068940 Medicago truncatula HOM05D000554 ORTHO05D002829 6.0e-07 57.4 49 55.1
Prupe.8G106500 Prunus persica HOM05D000554 ORTHO05D002829 6.0e-07 57.4 48 64.6
Potri.009G111200 Populus trichocarpa HOM05D000554 ORTHO05D002829 7.8e-07 57.0 48 66.7
Potri.T124304 Populus trichocarpa HOM05D000554 ORTHO05D002829 7.8e-07 57.0 48 66.7
CANSAT25G2071 Cannabis sativa HOM05D000554 ORTHO05D002829 1.0e-06 56.6 47 63.8
Hma1.2p1_1353F.1_g277660 Hydrangea macrophylla HOM05D000554 ORTHO05D002829 1.0e-06 56.6 48 62.5
Hma1.2p1_2724F.1_g327520 Hydrangea macrophylla HOM05D000554 ORTHO05D002829 1.0e-06 56.6 48 62.5
Lsat_1_v5_gn_9_109280 Lactuca sativa HOM05D000554 ORTHO05D002829 1.0e-06 56.6 49 61.2
Aa31LG2G16280 Aethionema arabicum HOM05D000554 ORTHO05D002829 1.3e-06 56.2 58 51.7
Cpa.g.sc62.101 Carica papaya HOM05D000554 ORTHO05D002829 1.3e-06 56.2 47 66.0
CiPaw.06G138200 Carya illinoinensis HOM05D000554 ORTHO05D002829 1.3e-06 56.2 48 64.6
AUR62016683 Chenopodium quinoa HOM05D000554 ORTHO05D002829 1.3e-06 56.2 47 59.6
Lj9C697T9 Lonicera japonica HOM05D000554 ORTHO05D002829 1.3e-06 56.2 51 56.9
Prupe.1G384900 Prunus persica HOM05D000554 ORTHO05D002829 1.3e-06 56.2 47 61.7
QL11p040084 Quercus lobata HOM05D000554 ORTHO05D002829 1.3e-06 56.2 51 60.8
Hund17641 Selenicereus undatus HOM05D000554 ORTHO05D002829 1.3e-06 56.2 48 58.3
Actinidia12987 Actinidia chinensis HOM05D000554 ORTHO05D002829 1.7e-06 55.8 49 65.3
CSS0033377 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D002829 1.7e-06 55.8 49 63.3
Migut.B00276 Erythranthe guttata HOM05D000554 ORTHO05D002829 1.7e-06 55.8 47 61.7
Peaxi162Scf00016g01128 Petunia axillaris HOM05D000554 ORTHO05D002829 1.7e-06 55.8 47 66.0
Rhsim05G0077400 Rhododendron simsii HOM05D000554 ORTHO05D002829 1.7e-06 55.8 49 61.2
BcaC06g36114 Brassica carinata HOM05D000554 ORTHO05D002829 2.3e-06 55.5 47 63.8
C07p07630 Brassica napus HOM05D000554 ORTHO05D002829 2.3e-06 55.5 47 63.8
BolC7t41184H Brassica oleracea HOM05D000554 ORTHO05D002829 2.3e-06 55.5 47 63.8
Duzib052G0459 Durio zibethinus HOM05D000554 ORTHO05D002829 2.3e-06 55.5 47 61.7
Duzib248G1087 Durio zibethinus HOM05D000554 ORTHO05D002829 2.3e-06 55.5 47 63.8
MD00G1039300 Malus domestica HOM05D000554 ORTHO05D002829 2.3e-06 55.5 49 57.1
Ciclev10003455m.g Citrus clementina HOM05D000554 ORTHO05D002829 3.0e-06 55.1 48 58.3
FAN15G0270 Fragaria x ananassa HOM05D000554 ORTHO05D002829 3.0e-06 55.1 48 56.2
Gohir.A03G213600 Gossypium hirsutum HOM05D000554 ORTHO05D002829 3.0e-06 55.1 50 62.0
Gohir.D02G235100 Gossypium hirsutum HOM05D000554 ORTHO05D002829 3.0e-06 55.1 50 62.0
Gorai.005G263200 Gossypium raimondii HOM05D000554 ORTHO05D002829 3.0e-06 55.1 50 62.0
MBI16_g13159_MAGBIO Magnolia biondii HOM05D000554 ORTHO05D002829 3.0e-06 55.1 47 57.4
Manes.18G031000 Manihot esculenta HOM05D000554 ORTHO05D002829 3.0e-06 55.1 49 53.1
Nitab4.5_0000110g0110 Nicotiana tabacum HOM05D000554 ORTHO05D002829 3.0e-06 55.1 47 57.4
Nitab4.5_0012474g0020 Nicotiana tabacum HOM05D000554 ORTHO05D002829 3.0e-06 55.1 47 57.4
RcHm_v2.0_Chr6g0300291 Rosa chinensis HOM05D000554 ORTHO05D002829 3.0e-06 55.1 48 56.2
EL10Ac1g01789 Beta vulgaris HOM05D000554 ORTHO05D002829 3.9e-06 54.7 56 50.0
CAN.G322.103 Capsicum annuum HOM05D000554 ORTHO05D002829 3.9e-06 54.7 46 67.4
FvH4_2g17740 Fragaria vesca HOM05D000554 ORTHO05D002829 3.9e-06 54.7 48 56.2
FAN24G1300 Fragaria x ananassa HOM05D000554 ORTHO05D002829 3.9e-06 54.7 48 56.2
SalBow3G2370 Salvia bowleyana HOM05D000554 ORTHO05D002829 3.9e-06 54.7 47 57.4
SalBow6G1486 Salvia bowleyana HOM05D000554 ORTHO05D002829 3.9e-06 54.7 47 57.4
Solyc04g079780.4 Solanum lycopersicum HOM05D000554 ORTHO05D002829 3.9e-06 54.7 47 55.3
vmacro21601 Vaccinium macrocarpon HOM05D000554 ORTHO05D002829 3.9e-06 54.7 49 57.1
MSTRG.16788 Avicennia marina HOM05D000554 ORTHO05D002829 5.1e-06 54.3 48 60.4
BcaNung05031 Brassica carinata HOM05D000554 ORTHO05D002829 5.1e-06 54.3 45 60.0
A07p04760 Brassica napus HOM05D000554 ORTHO05D002829 5.1e-06 54.3 45 64.4
C01p04430 Brassica napus HOM05D000554 ORTHO05D002829 5.1e-06 54.3 45 60.0
BolC1t00428H Brassica oleracea HOM05D000554 ORTHO05D002829 5.1e-06 54.3 45 60.0
BraA01t00395Z Brassica rapa HOM05D000554 ORTHO05D002829 5.1e-06 54.3 45 60.0
BraA07t28263Z Brassica rapa HOM05D000554 ORTHO05D002829 5.1e-06 54.3 45 64.4
CARHR242400 Cardamine hirsuta HOM05D000554 ORTHO05D002829 5.1e-06 54.3 45 62.2
FvH4_2g40440 Fragaria vesca HOM05D000554 ORTHO05D002829 5.1e-06 54.3 48 56.2
Hma1.2p1_0584F.1_g183480 Hydrangea macrophylla HOM05D000554 ORTHO05D002829 5.1e-06 54.3 48 64.6
Lj9C365G18 Lonicera japonica HOM05D000554 ORTHO05D002829 5.1e-06 54.3 63 49.2
MD08G1037700 Malus domestica HOM05D000554 ORTHO05D002829 5.1e-06 54.3 47 59.6
Nitab4.5_0004280g0100 Nicotiana tabacum HOM05D000554 ORTHO05D002829 5.1e-06 54.3 47 63.8
Peaxi162Scf02754g00013 Petunia axillaris HOM05D000554 ORTHO05D002829 5.1e-06 54.3 47 55.3
Solyc01g109280.3 Solanum lycopersicum HOM05D000554 ORTHO05D002829 5.1e-06 54.3 47 61.7
Sopen01g051460 Solanum pennellii HOM05D000554 ORTHO05D002829 5.1e-06 54.3 47 61.7
PGSC0003DMG400025178 Solanum tuberosum HOM05D000554 ORTHO05D002829 5.1e-06 54.3 47 61.7
AL7G16900 Arabidopsis lyrata HOM05D000554 ORTHO05D002829 6.6e-06 53.9 45 62.2
Carub.0007s0596 Capsella rubella HOM05D000554 ORTHO05D002829 6.6e-06 53.9 45 62.2
ClCG00G002980 Citrullus lanatus HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 62.5
ClCG09G017840 Citrullus lanatus HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 62.5
MELO3C021950.2 Cucumis melo HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 62.5
CsaV3_2G014450 Cucumis sativus L. HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 62.5
FvH4_2g07840 Fragaria vesca HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 60.4
FAN15G3486 Fragaria x ananassa HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 60.4
FAN20G2632 Fragaria x ananassa HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 60.4
FAN24G0287 Fragaria x ananassa HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 60.4
Nitab4.5_0003816g0040 Nicotiana tabacum HOM05D000554 ORTHO05D002829 6.6e-06 53.9 47 63.8
Oeu020773.1 Olea europaea HOM05D000554 ORTHO05D002829 6.6e-06 53.9 45 60.0
Oeu020774.1 Olea europaea HOM05D000554 ORTHO05D002829 6.6e-06 53.9 45 60.0
Sp3g29350 Schrenkiella parvula HOM05D000554 ORTHO05D002829 6.6e-06 53.9 48 60.4
A01p04070 Brassica napus HOM05D000554 ORTHO05D002829 8.6e-06 53.5 45 60.0
CAN.G371.118 Capsicum annuum HOM05D000554 ORTHO05D002829 8.6e-06 53.5 47 51.1
FAN15G2100 Fragaria x ananassa HOM05D000554 ORTHO05D002829 8.6e-06 53.5 48 54.2
Sed0018843 Sechium edule HOM05D000554 ORTHO05D002829 8.6e-06 53.5 48 58.3
PGSC0003DMG400016884 Solanum tuberosum HOM05D000554 ORTHO05D002829 8.6e-06 53.5 49 51.0
TWI79G0482 Tripterygium wilfordii HOM05D000554 ORTHO05D002829 8.6e-06 53.5 47 61.7


User provided reference genes

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