Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.2e-179 631.3 338 100.0
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.5e-163 577.8 338 85.5
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.8e-121 438.0 342 65.5
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 8.9e-121 437.6 340 60.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.6e-120 436.0 342 70.8
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.4e-120 435.3 342 64.9
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.5e-120 434.5 342 64.6
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.3e-119 433.7 343 65.9
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.7e-119 433.3 343 63.0
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.2e-119 433.0 339 64.0
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.2e-119 433.0 341 63.6
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.9e-119 431.8 336 68.5
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 8.3e-119 431.0 365 60.5
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 8.3e-119 431.0 343 68.2
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.2e-118 429.1 341 63.3
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.1e-118 428.7 342 63.5
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 5.4e-118 428.3 343 63.0
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 7.0e-118 427.9 338 68.3
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 9.2e-118 427.6 340 64.7
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.2e-118 427.6 339 65.2
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-117 426.8 341 62.8
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.6e-117 426.8 344 64.2
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-117 426.0 343 61.8
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.9e-117 424.9 336 68.5
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.8e-117 424.5 336 67.6
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.0e-116 424.1 348 64.9
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.7e-116 423.3 336 67.6
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.3e-116 422.9 339 62.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 2.3e-116 422.9 349 65.0
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 3.0e-116 422.5 341 66.6
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 8.6e-116 421.0 342 60.2
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.6e-116 421.0 359 60.4
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 1.5e-115 420.2 343 60.6
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.9e-115 419.9 346 63.3
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.9e-115 419.9 336 60.4
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.9e-115 419.9 340 65.9
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.9e-115 419.9 336 59.8
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.3e-115 418.7 342 62.0
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 4.3e-115 418.7 346 66.5
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 5.6e-115 418.3 343 58.6
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.3e-115 417.9 340 67.6
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 7.3e-115 417.9 347 63.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 7.3e-115 417.9 341 60.7
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 9.5e-115 417.5 338 60.4
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.2e-114 417.2 344 60.5
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.1e-114 416.4 338 63.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.6e-114 415.6 337 65.0
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 6.2e-114 414.8 336 60.4
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 6.2e-114 414.8 347 64.6
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 8.0e-114 414.5 336 62.5
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.4e-113 413.7 343 67.1
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 3.1e-113 412.5 333 66.7
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.1e-113 412.5 344 66.3
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 4.0e-113 412.1 336 58.6
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 6.8e-113 411.4 336 66.7
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.2e-112 410.6 345 60.3
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.6e-112 409.5 344 66.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.6e-112 409.5 341 63.9
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.4e-112 409.1 344 64.8
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 4.4e-112 408.7 341 57.5
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 7.5e-112 407.9 344 65.4
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 9.8e-112 407.5 343 60.9
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 9.8e-112 407.5 344 67.2
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.3e-111 407.1 337 59.3
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.7e-111 406.8 342 62.3
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.7e-111 406.8 343 59.5
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 2.9e-111 406.0 340 64.1
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 3.7e-111 405.6 345 57.4
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 6.4e-111 404.8 341 60.1
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.1e-110 404.1 343 56.3
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.9e-110 403.3 341 63.9
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 4.1e-110 402.1 348 58.0
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.1e-110 402.1 341 66.9
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.0e-109 399.8 339 61.9
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.0e-109 399.8 335 57.9
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.5e-109 399.1 340 58.8
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 7.8e-109 397.9 343 60.6
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.3e-108 397.1 344 60.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.3e-108 397.1 341 56.3
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.0e-108 396.0 345 62.9
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.0e-108 396.0 342 60.2
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 3.9e-108 395.6 341 57.8
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 5.0e-108 395.2 340 60.3
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 6.6e-108 394.8 341 56.3
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.5e-107 393.7 341 61.0
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 4.3e-107 392.1 340 62.1
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 7.3e-107 391.3 344 63.1
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 9.5e-107 391.0 338 62.4
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.6e-106 390.2 338 57.1
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.6e-106 390.2 338 62.4
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.1e-106 389.8 335 60.3
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 6.2e-106 388.3 345 61.4
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 6.2e-106 388.3 338 62.4
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.1e-105 387.5 342 58.2
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.4e-105 387.1 340 59.7
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 8.9e-105 384.4 333 55.9
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.6e-104 382.9 339 54.0
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 3.4e-104 382.5 341 53.7
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 2.9e-103 379.4 344 63.7
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.1e-102 377.5 446 47.3
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.1e-102 377.5 344 60.5
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.2e-102 375.9 338 56.5
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 4.1e-102 375.6 349 58.2
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 2.7e-101 372.9 342 58.2
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 6.0e-101 371.7 301 70.1
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.0e-100 370.9 323 55.4
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.0e-100 369.4 304 60.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.9e-100 369.0 338 56.5
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.7e-98 362.1 342 57.6
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.2e-98 361.7 338 54.4
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 6.8e-97 358.2 342 53.5
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.8e-97 358.2 345 57.1
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.6e-96 356.3 343 51.9
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 5.8e-96 355.1 342 55.0
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 9.9e-96 354.4 344 54.9
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.7e-95 353.6 342 54.7
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.9e-95 352.8 338 51.5
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 3.8e-95 352.4 343 53.1
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.1e-94 350.9 345 51.6
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.2e-94 349.4 338 56.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 4.1e-94 349.0 345 51.0
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 9.2e-94 347.8 337 51.0
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.1e-93 346.7 236 69.1
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 2.1e-93 346.7 341 49.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 6.0e-93 345.1 339 51.3
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 7.8e-93 344.7 340 56.8
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.7e-92 343.6 345 52.8
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 3.0e-92 342.8 345 50.7
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.1e-91 340.9 342 50.6
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.0e-89 332.4 423 50.6
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.2e-87 326.6 298 56.4
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.2e-86 322.8 288 60.8
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 6.0e-85 318.5 294 58.2
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 5.8e-80 302.0 279 62.4
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 8.4e-79 298.1 353 50.7
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 5.4e-78 295.4 296 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 6.2e-74 282.0 337 39.2
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 3.1e-73 279.6 295 48.8
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 9.0e-73 278.1 334 45.8
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 7.6e-72 275.0 244 61.5
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.3e-71 274.2 288 48.6
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 8.4e-71 271.6 337 45.7
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 9.3e-70 268.1 187 67.4
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 9.3e-70 268.1 243 53.1
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.1e-69 266.9 337 39.8
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.1e-69 266.9 241 53.1
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 5.6e-67 258.8 342 40.4
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.1e-66 256.9 222 60.8
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.4e-65 254.2 240 62.1
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 1.5e-64 250.8 241 56.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.0e-63 248.1 239 53.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 2.2e-63 246.9 281 45.9
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 3.8e-63 246.1 281 45.6
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 6.5e-63 245.4 337 45.1
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.0e-60 238.0 224 52.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 4.3e-59 232.6 224 54.5
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 1.4e-57 227.6 231 51.1
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 2.9e-55 219.9 145 66.9
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 8.5e-55 218.4 235 48.1
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 1.0e-52 211.5 234 49.6
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.1e-51 208.0 136 69.1
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.4e-48 196.4 241 43.6
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.8e-39 166.4 140 56.4
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.9e-38 164.1 102 70.6
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.2e-30 136.7 111 61.3
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.1e-29 134.0 108 60.2
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 5.2e-28 129.4 139 46.8
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.5e-24 116.7 75 73.3
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.1e-22 111.7 75 66.7
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 6.1e-21 105.9 149 34.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 6.8e-20 102.4 63 66.7
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.3e-15 88.2 56 58.9
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-14 84.0 54 68.5
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 2.3e-07 60.8 62 38.7
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-06 57.4 140 28.6


User provided reference genes

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