Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1455 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 7.0e-207 723.8 380 100.0
CDE03G0515 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 3.5e-174 615.1 401 84.5
Nn2g13664 Nelumbo nucifera HOM05D005342 ORTHO05D006925 2.3e-117 426.4 412 58.0
ATR0763G223 Amborella trichopoda HOM05D005342 ORTHO05D006925 1.1e-111 407.5 409 54.3
TAR626G0514 Trochodendron aralioides HOM05D005342 ORTHO05D006925 1.1e-111 407.5 410 56.6
PSO017G0115 Papaver somniferum HOM05D005342 ORTHO05D006925 1.9e-111 406.8 410 55.6
PSO063G2198 Papaver somniferum HOM05D005342 ORTHO05D006925 4.2e-111 405.6 410 55.6
GSVIVG01012146001 Vitis vinifera HOM05D005342 ORTHO05D006925 9.1e-106 387.9 412 53.4
vmacro21284 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 2.2e-104 383.3 416 52.6
EL10Ac2g03680 Beta vulgaris HOM05D005342 ORTHO05D006925 3.8e-104 382.5 423 52.5
HPP92_001898 Vanilla planifolia HOM05D005342 ORTHO05D006925 1.9e-103 380.2 284 67.6
Potri.001G160800 Populus trichocarpa HOM05D005342 ORTHO05D006925 9.4e-103 377.9 419 52.0
DCAR_001275 Daucus carota HOM05D005342 ORTHO05D006925 3.6e-102 375.9 419 54.7
Dinv11757 Davidia involucrata HOM05D005342 ORTHO05D006925 4.7e-102 375.6 415 51.3
CsaV3_6G052760 Cucumis sativus L. HOM05D005342 ORTHO05D006925 7.9e-102 374.8 376 55.6
Dinv36886 Davidia involucrata HOM05D005342 ORTHO05D006925 7.9e-102 374.8 415 51.1
Migut.M02010 Erythranthe guttata HOM05D005342 ORTHO05D006925 1.4e-101 374.0 412 50.7
Aa31LG9G16230 Aethionema arabicum HOM05D005342 ORTHO05D006925 8.8e-101 371.3 414 51.0
Gorai.002G218700 Gossypium raimondii HOM05D005342 ORTHO05D006925 2.6e-100 369.8 373 55.5
Lalb_Chr10g0095551 Lupinus albus HOM05D005342 ORTHO05D006925 1.3e-99 367.5 379 53.6
Thecc.02G004100 Theobroma cacao HOM05D005342 ORTHO05D006925 1.7e-99 367.1 390 54.4
MELO3C007034.2 Cucumis melo HOM05D005342 ORTHO05D006925 2.2e-99 366.7 392 55.1
PGR004G0306 Punica granatum HOM05D005342 ORTHO05D006925 2.2e-99 366.7 419 51.8
Gohir.D01G176400 Gossypium hirsutum HOM05D005342 ORTHO05D006925 6.3e-99 365.2 378 54.5
THA.LOC104814325 Tarenaya hassleriana HOM05D005342 ORTHO05D006925 8.2e-99 364.8 425 52.2
CSS0036835 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 1.1e-98 364.4 413 53.0
HanXRQChr05g0148741 Helianthus annuus HOM05D005342 ORTHO05D006925 1.1e-98 364.4 425 49.9
PGSC0003DMG400017735 Solanum tuberosum HOM05D005342 ORTHO05D006925 2.4e-98 363.2 420 49.0
CSS0011520 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 4.1e-98 362.5 418 52.9
AUR62038720 Chenopodium quinoa HOM05D005342 ORTHO05D006925 4.1e-98 362.5 285 62.8
Hund19384 Selenicereus undatus HOM05D005342 ORTHO05D006925 4.1e-98 362.5 413 52.1
A09p35250 Brassica napus HOM05D005342 ORTHO05D006925 5.3e-98 362.1 379 51.5
CiPaw.09G137700 Carya illinoinensis HOM05D005342 ORTHO05D006925 5.3e-98 362.1 378 56.1
Glyma.07G173800 Glycine max HOM05D005342 ORTHO05D006925 5.3e-98 362.1 373 55.8
Sabra01G0131500 Salix brachista HOM05D005342 ORTHO05D006925 5.3e-98 362.1 451 48.1
Manes.03G075200 Manihot esculenta HOM05D005342 ORTHO05D006925 1.2e-97 360.9 390 52.6
Solyc02g081660.3 Solanum lycopersicum HOM05D005342 ORTHO05D006925 2.0e-97 360.1 420 48.8
Sopen02g026270 Solanum pennellii HOM05D005342 ORTHO05D006925 2.0e-97 360.1 420 49.3
arahy.Tifrunner.gnm1.ann1.EGN9M7 Arachis hypogaea HOM05D005342 ORTHO05D006925 4.5e-97 359.0 403 52.9
CARHR030500 Cardamine hirsuta HOM05D005342 ORTHO05D006925 4.5e-97 359.0 410 49.0
Thhalv10007654m.g Eutrema salsugineum HOM05D005342 ORTHO05D006925 5.9e-97 358.6 415 49.4
Ah.11g044120 Amaranthus hybridus HOM05D005342 ORTHO05D006925 7.7e-97 358.2 454 47.6
QL11p012260 Quercus lobata HOM05D005342 ORTHO05D006925 7.7e-97 358.2 411 53.0
CANSAT35G0196 Cannabis sativa HOM05D005342 ORTHO05D006925 1.0e-96 357.8 374 55.9
Medtr6g024095 Medicago truncatula HOM05D005342 ORTHO05D006925 1.0e-96 357.8 355 54.4
Psat6g050320 Pisum sativum HOM05D005342 ORTHO05D006925 1.0e-96 357.8 408 52.2
BraA07t28750Z Brassica rapa HOM05D005342 ORTHO05D006925 1.3e-96 357.5 409 49.4
TWI53G1312 Tripterygium wilfordii HOM05D005342 ORTHO05D006925 1.3e-96 357.5 411 49.4
AT1G30960 Arabidopsis thaliana HOM05D005342 ORTHO05D006925 1.7e-96 357.1 413 48.7
Phvul.003G015000 Phaseolus vulgaris HOM05D005342 ORTHO05D006925 1.7e-96 357.1 356 56.2
SalBow8G1060 Salvia bowleyana HOM05D005342 ORTHO05D006925 1.7e-96 357.1 413 48.7
MSTRG.16371 Avicennia marina HOM05D005342 ORTHO05D006925 2.9e-96 356.3 413 50.8
Lj2A343T76 Lonicera japonica HOM05D005342 ORTHO05D006925 2.9e-96 356.3 437 50.8
Os08g0207600 Oryza sativa ssp. japonica HOM05D005342 ORTHO05D006925 2.9e-96 356.3 332 57.8
Ca_26328_v3 Cicer arietinum L. HOM05D005342 ORTHO05D006925 3.8e-96 355.9 368 54.3
Zm00001eb171110 Zea mays HOM05D005342 ORTHO05D006925 5.0e-96 355.5 329 57.8
BraA09t39052Z Brassica rapa HOM05D005342 ORTHO05D006925 6.5e-96 355.1 408 49.5
AL1G45370 Arabidopsis lyrata HOM05D005342 ORTHO05D006925 8.5e-96 354.8 420 48.8
BcaB07g32756 Brassica carinata HOM05D005342 ORTHO05D006925 1.1e-95 354.4 410 50.7
RcHm_v2.0_Chr5g0021061 Rosa chinensis HOM05D005342 ORTHO05D006925 1.1e-95 354.4 409 52.8
Sp1g26820 Schrenkiella parvula HOM05D005342 ORTHO05D006925 1.1e-95 354.4 418 48.6
A07p09560 Brassica napus HOM05D005342 ORTHO05D006925 1.4e-95 354.0 409 49.1
TPR.G34568 Trifolium pratense HOM05D005342 ORTHO05D006925 1.4e-95 354.0 263 66.2
Carub.0001s2937 Capsella rubella HOM05D005342 ORTHO05D006925 3.2e-95 352.8 417 49.2
Medtr5g020440 Medicago truncatula HOM05D005342 ORTHO05D006925 3.2e-95 352.8 409 50.4
BolC5t31751H Brassica oleracea HOM05D005342 ORTHO05D006925 4.2e-95 352.4 404 48.8
Aqoxy1G01397 Aquilegia oxysepala HOM05D005342 ORTHO05D006925 7.2e-95 351.7 424 52.1
Lj2g0003117 Lotus japonicus HOM05D005342 ORTHO05D006925 7.2e-95 351.7 381 55.1
ECA246G2798 Erigeron canadensis HOM05D005342 ORTHO05D006925 1.2e-94 350.9 425 48.7
C07p14720 Brassica napus HOM05D005342 ORTHO05D006925 1.6e-94 350.5 409 47.9
Lsat_1_v5_gn_6_95820 Lactuca sativa HOM05D005342 ORTHO05D006925 2.1e-94 350.1 450 47.8
BcaC05g27129 Brassica carinata HOM05D005342 ORTHO05D006925 2.7e-94 349.7 404 48.5
C05p30140 Brassica napus HOM05D005342 ORTHO05D006925 2.7e-94 349.7 404 48.5
Sed0018199 Sechium edule HOM05D005342 ORTHO05D006925 3.6e-94 349.4 376 55.1
BolC7t41974H Brassica oleracea HOM05D005342 ORTHO05D006925 4.7e-94 349.0 410 47.8
Prupe.4G117500 Prunus persica HOM05D005342 ORTHO05D006925 8.0e-94 348.2 398 51.8
Nitab4.5_0013176g0020 Nicotiana tabacum HOM05D005342 ORTHO05D006925 1.8e-93 347.1 432 48.1
MD05G1246900 Malus domestica HOM05D005342 ORTHO05D006925 2.3e-93 346.7 424 50.9
Atru.chr10.349 Acer truncatum HOM05D005342 ORTHO05D006925 3.0e-93 346.3 415 50.8
Cfa001127 Carpinus fangiana HOM05D005342 ORTHO05D006925 5.2e-93 345.5 404 51.5
MD10G1227500 Malus domestica HOM05D005342 ORTHO05D006925 6.7e-93 345.1 422 49.3
Haze_05265 Corylus avellana HOM05D005342 ORTHO05D006925 8.8e-93 344.7 413 51.8
Atru.chr10.317 Acer truncatum HOM05D005342 ORTHO05D006925 1.1e-92 344.4 415 50.6
SHI17083 Sapria himalayana HOM05D005342 ORTHO05D006925 2.0e-92 343.6 335 53.7
Ciclev10015344m.g Citrus clementina HOM05D005342 ORTHO05D006925 3.3e-92 342.8 414 49.3
SGA_v2.0_scaffold298G47707 Striga asiatica HOM05D005342 ORTHO05D006925 9.7e-92 341.3 456 45.2
FAN21G1494 Fragaria x ananassa HOM05D005342 ORTHO05D006925 2.2e-91 340.1 426 50.5
unitig_749.g13576 Utricularia gibba HOM05D005342 ORTHO05D006925 2.8e-91 339.7 379 50.4
FvH4_3g12950 Fragaria vesca HOM05D005342 ORTHO05D006925 3.7e-91 339.3 413 51.6
CAN.G809.68 Capsicum annuum HOM05D005342 ORTHO05D006925 1.8e-90 337.0 422 47.9
Peaxi162Scf00520g00219 Petunia axillaris HOM05D005342 ORTHO05D006925 5.3e-90 335.5 406 52.7
ClCG01G025520 Citrullus lanatus HOM05D005342 ORTHO05D006925 2.6e-89 333.2 386 52.8
FAN11G0369 Fragaria x ananassa HOM05D005342 ORTHO05D006925 5.9e-89 332.0 422 50.5
FAN16G1572 Fragaria x ananassa HOM05D005342 ORTHO05D006925 5.5e-87 325.5 419 50.8
Gohir.A01G185820 Gossypium hirsutum HOM05D005342 ORTHO05D006925 6.1e-86 322.0 209 72.2
arahy.Tifrunner.gnm1.ann1.T4IDLE Arachis hypogaea HOM05D005342 ORTHO05D006925 1.8e-85 320.5 404 47.8
Eucgr.D00013 Eucalyptus grandis HOM05D005342 ORTHO05D006925 2.6e-84 316.6 209 71.3
Cpa.g.sc1627.2 Carica papaya HOM05D005342 ORTHO05D006925 5.7e-84 315.5 210 70.0
AUR62043831 Chenopodium quinoa HOM05D005342 ORTHO05D006925 1.3e-83 314.3 208 68.8
Rhsim03G0048600 Rhododendron simsii HOM05D005342 ORTHO05D006925 4.1e-82 309.3 436 45.6
Rhsim03G0048000 Rhododendron simsii HOM05D005342 ORTHO05D006925 2.7e-81 306.6 207 71.0
AUR62020653 Chenopodium quinoa HOM05D005342 ORTHO05D006925 3.8e-80 302.8 201 69.7
FAN25G1408 Fragaria x ananassa HOM05D005342 ORTHO05D006925 1.1e-79 301.2 225 66.2
vmacro07644 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 1.0e-77 294.7 461 42.3
Medtr1g033240 Medicago truncatula HOM05D005342 ORTHO05D006925 2.3e-77 293.5 379 45.1
Duzib132G0347 Durio zibethinus HOM05D005342 ORTHO05D006925 1.8e-74 283.9 411 43.8
Sc17g0004080 Simmondsia chinensis HOM05D005342 ORTHO05D006925 2.8e-70 270.0 319 50.8
Actinidia37827 Actinidia chinensis HOM05D005342 ORTHO05D006925 3.7e-67 259.6 406 45.8
Rhsim05G0150700 Rhododendron simsii HOM05D005342 ORTHO05D006925 1.2e-65 254.6 231 56.7
SMO347G0253 Selaginella moellendorffii HOM05D005342 ORTHO05D006925 1.4e-61 241.1 272 45.2
Mapoly0029s0109 Marchantia polymorpha HOM05D005342 ORTHO05D006925 3.7e-59 233.0 283 42.4
SGA_v2.0_scaffold175G39327 Striga asiatica HOM05D005342 ORTHO05D006925 3.7e-59 233.0 191 60.7
Pp3c8_14960 Physcomitrium patens HOM05D005342 ORTHO05D006925 3.2e-58 229.9 278 42.8
Cc09_g05200 Coffea canephora HOM05D005342 ORTHO05D006925 4.1e-58 229.6 337 43.9
HPP92_001865 Vanilla planifolia HOM05D005342 ORTHO05D006925 5.6e-55 219.2 133 76.7
AagrBONN_evm.TU.Sc2ySwM_368.2515 Anthoceros agrestis HOM05D005342 ORTHO05D006925 6.2e-54 215.7 282 39.4
CSS0007057 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 8.0e-54 215.3 159 69.2
Nitab4.5_0006794g0030 Nicotiana tabacum HOM05D005342 ORTHO05D006925 1.6e-41 174.5 317 41.3
CSS0009297 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 6.0e-41 172.6 105 78.1
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.5e-36 157.9 274 33.2
Prupe.4G117700 Prunus persica HOM05D005342 ORTHO05D006925 1.3e-35 154.8 132 57.6
Cc09_g05190 Coffea canephora HOM05D005342 ORTHO05D006925 3.0e-32 143.7 85 75.3
HPP92_001866 Vanilla planifolia HOM05D005342 ORTHO05D006925 6.9e-29 132.5 258 38.8
BcaB04g18195 Brassica carinata HOM05D005342 ORTHO05D006925 1.5e-28 131.3 89 65.2
MCO16G643 Micromonas commoda HOM05D005342 ORTHO05D006925 2.2e-27 127.5 276 32.2
Oeu016702.1 Olea europaea HOM05D005342 ORTHO05D006925 2.8e-22 110.5 248 39.5
Atru.chr10.358 Acer truncatum HOM05D002757 ORTHO05D003252 3.6e-22 110.2 254 37.8
BraA08t33082Z Brassica rapa HOM05D005342 ORTHO05D006925 2.4e-18 97.4 88 60.2
SEGI_07430 Sequoiadendron giganteum HOM05D005342 ORTHO05D006925 5.3e-13 79.7 50 72.0
SEGI_08357 Sequoiadendron giganteum HOM05D005342 ORTHO05D006925 7.6e-12 75.9 48 70.8
Cpa.g.sc30.113 Carica papaya HOM05D005342 ORTHO05D006925 5.5e-10 69.7 176 36.4
Mapoly0055s0018 Marchantia polymorpha HOM05D006011 ORTHO05D007421 1.6e-09 68.2 265 23.4
MSTRG.2482 Avicennia marina HOM05D006011 ORTHO05D007421 2.5e-07 60.8 263 22.4
C09p11830 Brassica napus HOM05D006011 ORTHO05D007421 5.7e-07 59.7 277 20.6
BcaC04g23130 Brassica carinata HOM05D006011 ORTHO05D007421 9.6e-07 58.9 277 20.6
A09p09970 Brassica napus HOM05D006011 ORTHO05D007421 9.6e-07 58.9 277 20.6
BolC9t54073H Brassica oleracea HOM05D006011 ORTHO05D007421 9.6e-07 58.9 277 20.6
BraA09t36643Z Brassica rapa HOM05D006011 ORTHO05D007421 9.6e-07 58.9 277 20.6
BcaNung05721 Brassica carinata HOM05D006011 ORTHO05D007421 3.7e-06 57.0 309 20.7


User provided reference genes

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