Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.0e-146 521.9 280 100.0
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.8e-123 444.1 269 90.7
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.3e-48 197.6 282 46.1
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 5.9e-46 188.7 287 45.6
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 2.3e-45 186.8 286 44.4
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.9e-45 186.4 261 49.4
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 5.0e-45 185.7 289 43.9
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 5.0e-45 185.7 284 44.0
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.6e-45 185.3 267 47.9
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 8.6e-45 184.9 267 47.9
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.5e-44 184.1 288 44.1
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.6e-44 182.2 289 45.7
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 5.6e-44 182.2 265 46.4
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 9.5e-44 181.4 293 44.0
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.2e-43 181.0 289 43.6
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 1.2e-43 181.0 288 43.4
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 1.6e-43 180.6 267 44.9
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 3.6e-43 179.5 295 44.4
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.7e-43 179.1 289 42.9
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 4.7e-43 179.1 257 46.3
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.3e-42 176.8 267 46.8
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.1e-42 176.4 252 49.6
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 4.0e-42 176.0 297 41.8
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 7.5e-41 171.8 278 45.7
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 9.8e-41 171.4 266 43.6
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.3e-40 171.0 284 42.3
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.3e-40 171.0 284 42.3
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.3e-40 171.0 285 40.4
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.2e-40 170.2 267 46.1
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-40 169.9 293 40.3
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.9e-40 169.1 264 43.2
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.9e-40 169.1 282 42.6
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 4.9e-40 169.1 274 46.0
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 6.4e-40 168.7 248 46.8
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.1e-39 167.9 291 40.2
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 1.1e-39 167.9 280 41.8
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.9e-39 167.2 264 42.8
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.9e-39 167.2 255 42.4
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.2e-39 166.4 265 42.6
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 5.4e-39 165.6 267 46.8
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.4e-39 165.6 282 41.8
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 5.4e-39 165.6 278 43.2
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 5.4e-39 165.6 270 42.6
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 7.0e-39 165.2 284 39.8
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.0e-39 165.2 282 41.8
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.2e-38 164.5 251 46.6
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.6e-38 164.1 265 41.5
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.0e-38 163.7 269 41.6
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.0e-38 163.7 269 42.8
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 3.5e-38 162.9 269 47.2
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 3.5e-38 162.9 269 42.8
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.7e-37 160.6 266 44.7
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.3e-37 160.2 254 43.7
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 5.0e-37 159.1 269 42.4
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.1e-36 157.9 270 42.2
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.1e-36 157.9 274 42.3
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 4.3e-36 156.0 252 42.5
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 7.3e-36 155.2 249 42.6
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 1.2e-35 154.5 276 42.8
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.6e-35 154.1 252 40.5
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.1e-35 153.7 286 38.1
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.7e-35 152.5 264 41.3
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 6.2e-35 152.1 270 42.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 8.1e-35 151.8 267 41.2
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 8.1e-35 151.8 290 39.0
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.1e-35 151.8 272 46.3
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 2.3e-34 150.2 292 38.0
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.0e-34 149.4 265 41.1
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.2e-34 149.1 251 43.0
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 6.8e-34 148.7 315 39.4
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.5e-33 147.5 260 40.0
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 3.4e-33 146.4 267 42.7
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 7.5e-33 145.2 248 42.3
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 7.5e-33 145.2 275 40.0
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 1.3e-32 144.4 285 41.1
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.7e-32 144.1 286 39.2
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.2e-32 143.7 278 37.8
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.2e-32 143.7 289 38.4
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 3.7e-32 142.9 266 43.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 8.3e-32 141.7 228 42.5
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 1.9e-31 140.6 299 40.5
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 1.9e-31 140.6 285 42.8
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 2.4e-31 140.2 284 39.4
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 4.1e-31 139.4 302 37.7
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 5.4e-31 139.0 279 39.8
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 2.7e-30 136.7 274 39.4
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 6.0e-30 135.6 255 41.2
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.0e-30 135.6 252 40.9
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 6.0e-30 135.6 283 37.8
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.0e-29 134.8 270 39.3
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.3e-29 134.4 297 37.7
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.7e-29 134.0 287 36.6
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.3e-29 133.7 255 38.8
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 3.9e-29 132.9 313 40.9
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 6.6e-29 132.1 264 39.8
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.5e-28 131.0 314 36.6
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 1.9e-28 130.6 269 39.4
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 9.5e-28 128.3 287 36.2
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 9.5e-28 128.3 261 43.7
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 2.1e-27 127.1 262 44.3
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 2.8e-27 126.7 279 40.9
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 6.2e-27 125.6 267 39.7
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 6.2e-27 125.6 266 39.1
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 8.1e-27 125.2 252 42.5
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 8.1e-27 125.2 265 40.4
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.1e-26 124.8 312 35.6
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.8e-26 124.0 276 37.0
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 3.1e-26 123.2 277 35.7
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 5.2e-26 122.5 311 38.9
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 8.9e-26 121.7 320 36.6
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 8.9e-26 121.7 231 38.5
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 2.6e-25 120.2 306 36.9
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.9e-24 115.9 252 34.9
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 8.4e-24 115.2 345 31.3
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 8.4e-24 115.2 307 37.8
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 1.1e-23 114.8 305 34.8
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.4e-23 114.4 294 37.1
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 2.4e-23 113.6 311 37.6
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.2e-22 111.3 274 35.8
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.6e-22 110.9 271 38.0
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.1e-22 110.5 265 35.1
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 2.7e-22 110.2 238 37.8
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.3e-21 107.8 293 38.2
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.3e-21 107.8 115 54.8
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 1.7e-21 107.5 313 33.2
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 1.7e-21 107.5 313 33.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.3e-21 107.1 263 33.8
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 3.9e-21 106.3 312 37.2
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 3.9e-21 106.3 312 37.2
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 8.6e-21 105.1 312 35.9
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.1e-20 104.8 273 35.5
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 3.3e-20 103.2 176 42.0
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 4.3e-20 102.8 258 36.4
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.6e-20 102.4 295 36.9
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 9.6e-20 101.7 264 38.6
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 6.2e-19 99.0 256 37.5
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 8.1e-19 98.6 279 34.8
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.1e-18 98.2 220 34.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.1e-18 98.2 220 34.5
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 8.9e-18 95.1 159 42.1
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 8.9e-18 95.1 180 40.0
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.2e-17 94.7 199 39.7
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 1.5e-17 94.4 222 35.6
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 3.4e-17 93.2 270 33.7
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 3.4e-17 93.2 167 39.5
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 3.4e-17 93.2 254 31.1
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 4.9e-16 89.4 272 33.5
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 8.4e-16 88.6 288 30.9
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 3.0e-13 80.1 86 52.3
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 8.7e-13 78.6 158 38.6
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.9e-12 77.4 277 31.8
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.1e-11 73.9 212 33.5
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 5.3e-10 69.3 127 40.2
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 6.9e-10 68.9 210 31.0
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 1.5e-09 67.8 110 43.6
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 4.4e-09 66.2 84 46.4
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 2.9e-08 63.5 244 27.5
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 6.4e-08 62.4 102 44.1
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 1.4e-07 61.2 80 52.5
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 4.2e-07 59.7 68 50.0
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 7.1e-07 58.9 309 26.2
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.1e-06 57.4 101 39.6
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 3.5e-06 56.6 89 47.2
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 4.6e-06 56.2 323 27.2
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 4.6e-06 56.2 49 65.3
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 4.6e-06 56.2 75 49.3
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 6.0e-06 55.8 91 42.9
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 6.0e-06 55.8 83 44.6


User provided reference genes

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