Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1377 Ceratophyllum demersum HOM05D004113 ORTHO05D005233 1.3e-51 206.1 103 100.0
CDE08G0148 Ceratophyllum demersum HOM05D004113 ORTHO05D005233 1.9e-37 159.1 83 95.2
Prupe.6G197400 Prunus persica HOM05D004113 ORTHO05D005233 2.3e-19 99.0 93 49.5
MD01G1038300 Malus domestica HOM05D004113 ORTHO05D005233 3.0e-19 98.6 84 53.6
Glyma.06G152400 Glycine max HOM05D004113 ORTHO05D005233 6.6e-19 97.4 81 53.1
HanXRQChr12g0368871 Helianthus annuus HOM05D004113 ORTHO05D005233 8.7e-19 97.1 86 54.7
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 1.1e-18 96.7 82 51.2
MD15G1314600 Malus domestica HOM05D004113 ORTHO05D005233 2.5e-18 95.5 84 51.2
Glyma.04G214000 Glycine max HOM05D004113 ORTHO05D005233 3.3e-18 95.1 87 48.3
Phvul.009G149400 Phaseolus vulgaris HOM05D004113 ORTHO05D005233 5.6e-18 94.4 87 49.4
Gohir.D11G230300 Gossypium hirsutum HOM05D004113 ORTHO05D005233 7.3e-18 94.0 82 47.6
TPR.G34657 Trifolium pratense HOM05D004113 ORTHO05D005233 9.6e-18 93.6 86 48.8
Lj1g0003494 Lotus japonicus HOM05D004113 ORTHO05D005233 1.3e-17 93.2 87 49.4
Psat0s10365g0080 Pisum sativum HOM05D004113 ORTHO05D005233 1.6e-17 92.8 88 46.6
Psat5g060000 Pisum sativum HOM05D004113 ORTHO05D005233 1.6e-17 92.8 88 46.6
QL06p029175 Quercus lobata HOM05D004113 ORTHO05D005233 1.6e-17 92.8 87 50.6
Migut.L00890 Erythranthe guttata HOM05D004113 ORTHO05D005233 2.1e-17 92.4 88 47.7
arahy.Tifrunner.gnm1.ann1.FMR9EU Arachis hypogaea HOM05D004113 ORTHO05D005233 2.8e-17 92.0 81 49.4
arahy.Tifrunner.gnm1.ann1.PRK495 Arachis hypogaea HOM05D004113 ORTHO05D005233 2.8e-17 92.0 81 49.4
Ca_16933_v3 Cicer arietinum L. HOM05D004113 ORTHO05D005233 2.8e-17 92.0 86 48.8
Gorai.003G067200 Gossypium raimondii HOM05D004113 ORTHO05D005233 2.8e-17 92.0 82 46.3
Lalb_Chr00c34g0408621 Lupinus albus HOM05D004113 ORTHO05D005233 2.8e-17 92.0 82 48.8
Lalb_Chr12g0203181 Lupinus albus HOM05D004113 ORTHO05D005233 2.8e-17 92.0 82 48.8
Medtr3g095980 Medicago truncatula HOM05D004113 ORTHO05D005233 2.8e-17 92.0 86 48.8
Cfa002816 Carpinus fangiana HOM05D004113 ORTHO05D005233 3.6e-17 91.7 84 52.4
CiPaw.03G129200 Carya illinoinensis HOM05D004113 ORTHO05D005233 3.6e-17 91.7 85 50.6
Dinv06063 Davidia involucrata HOM05D004113 ORTHO05D005233 3.6e-17 91.7 85 50.6
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 3.6e-17 91.7 91 46.2
Gohir.A11G230200 Gossypium hirsutum HOM05D004113 ORTHO05D005233 4.8e-17 91.3 82 46.3
VMungo1309G2376 Vigna mungo HOM05D004113 ORTHO05D005233 4.8e-17 91.3 87 48.3
Nitab4.5_0000805g0060 Nicotiana tabacum HOM05D004113 ORTHO05D005233 6.2e-17 90.9 85 49.4
Nitab4.5_0011816g0010 Nicotiana tabacum HOM05D004113 ORTHO05D005233 6.2e-17 90.9 85 49.4
Oeu004248.1 Olea europaea HOM05D004113 ORTHO05D005233 6.2e-17 90.9 86 50.0
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 6.2e-17 90.9 90 47.8
RhsimUnG0133000 Rhododendron simsii HOM05D004113 ORTHO05D005233 6.2e-17 90.9 92 48.9
PGSC0003DMG400028678 Solanum tuberosum HOM05D004113 ORTHO05D005233 6.2e-17 90.9 85 49.4
Haze_25111 Corylus avellana HOM05D004113 ORTHO05D005233 1.4e-16 89.7 84 50.0
Potri.007G108301 Populus trichocarpa HOM05D004113 ORTHO05D005233 1.4e-16 89.7 82 48.8
Solyc11g005820.1 Solanum lycopersicum HOM05D004113 ORTHO05D005233 1.4e-16 89.7 85 48.2
Atru.chr4.844 Acer truncatum HOM05D004113 ORTHO05D005233 2.4e-16 89.0 82 46.3
CAN.G1163.3 Capsicum annuum HOM05D004113 ORTHO05D005233 2.4e-16 89.0 85 48.2
TAR628G1510 Trochodendron aralioides HOM05D004113 ORTHO05D005233 3.1e-16 88.6 85 52.9
Duzib147G1472 Durio zibethinus HOM05D004113 ORTHO05D005233 4.0e-16 88.2 96 43.8
Sopen11g001780 Solanum pennellii HOM05D004113 ORTHO05D005233 4.0e-16 88.2 85 47.1
COL.COLO4_35683 Corchorus olitorius HOM05D004113 ORTHO05D005233 5.3e-16 87.8 82 46.3
Lalb_Chr08g0238441 Lupinus albus HOM05D004113 ORTHO05D005233 5.3e-16 87.8 86 47.7
Thecc.01G128300 Theobroma cacao HOM05D004113 ORTHO05D005233 5.3e-16 87.8 82 50.0
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 6.9e-16 87.4 97 41.2
VMungo0251G1253 Vigna mungo HOM05D004113 ORTHO05D005233 6.9e-16 87.4 82 43.9
DCAR_001364 Daucus carota HOM05D004113 ORTHO05D005233 1.2e-15 86.7 85 47.1
Cc07_g18140 Coffea canephora HOM05D004113 ORTHO05D005233 1.5e-15 86.3 85 48.2
Oeu047690.1 Olea europaea HOM05D004113 ORTHO05D005233 1.5e-15 86.3 85 47.1
Peaxi162Scf00589g00001 Petunia axillaris HOM05D004113 ORTHO05D005233 2.0e-15 85.9 85 45.9
MSTRG.23446 Avicennia marina HOM05D004113 ORTHO05D005233 2.6e-15 85.5 81 50.6
Cpa.g.sc42.138 Carica papaya HOM05D004113 ORTHO05D005233 2.6e-15 85.5 84 45.2
FvH4_1g24160 Fragaria vesca HOM05D004113 ORTHO05D005233 3.4e-15 85.1 81 46.9
FAN19G1994 Fragaria x ananassa HOM05D004113 ORTHO05D005233 3.4e-15 85.1 81 46.9
CANSAT01G1731 Cannabis sativa HOM05D004113 ORTHO05D005233 4.4e-15 84.7 82 48.8
CANSAT01G2965 Cannabis sativa HOM05D004113 ORTHO05D005233 4.4e-15 84.7 82 48.8
Migut.H00735 Erythranthe guttata HOM05D004113 ORTHO05D005233 4.4e-15 84.7 82 50.0
FAN16G3582 Fragaria x ananassa HOM05D004113 ORTHO05D005233 7.6e-15 84.0 81 46.9
Hma1.2p1_0528F.1_g173060 Hydrangea macrophylla HOM05D004113 ORTHO05D005233 7.6e-15 84.0 88 43.2
RcHm_v2.0_Chr2g0120401 Rosa chinensis HOM05D004113 ORTHO05D005233 7.6e-15 84.0 84 45.2
FAN26G3157 Fragaria x ananassa HOM05D004113 ORTHO05D005233 9.9e-15 83.6 81 45.7
Nn5g28620 Nelumbo nucifera HOM05D004113 ORTHO05D005233 9.9e-15 83.6 84 48.8
Actinidia06637 Actinidia chinensis HOM05D004113 ORTHO05D005233 1.7e-14 82.8 85 44.7
THA.LOC104819318 Tarenaya hassleriana HOM05D004113 ORTHO05D005233 1.7e-14 82.8 84 47.6
FAN28G2384 Fragaria x ananassa HOM05D004113 ORTHO05D005233 6.4e-14 80.9 81 45.7
TWI75G0632 Tripterygium wilfordii HOM05D004113 ORTHO05D005233 6.4e-14 80.9 84 44.0
Sed0011375 Sechium edule HOM05D004113 ORTHO05D005233 8.4e-14 80.5 83 45.8
MELO3C008049.2 Cucumis melo HOM05D004113 ORTHO05D005233 1.1e-13 80.1 83 44.6
ClCG01G015470 Citrullus lanatus HOM05D004113 ORTHO05D005233 1.9e-13 79.3 83 44.6
CARHR287460 Cardamine hirsuta HOM05D004113 ORTHO05D005233 4.2e-13 78.2 86 40.7
CsaV3_6G041710 Cucumis sativus L. HOM05D004113 ORTHO05D005233 4.2e-13 78.2 83 43.4
CARHR278590 Cardamine hirsuta HOM05D004113 ORTHO05D005233 5.4e-13 77.8 86 40.7
PSO063G6208 Papaver somniferum HOM05D004113 ORTHO05D005233 5.4e-13 77.8 86 44.2
PSO782G3380 Papaver somniferum HOM05D004113 ORTHO05D005233 5.4e-13 77.8 86 44.2
THA.LOC104799518 Tarenaya hassleriana HOM05D004113 ORTHO05D005233 5.4e-13 77.8 85 44.7
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 7.1e-13 77.4 86 40.7
EL10Ac1g01806 Beta vulgaris HOM05D004113 ORTHO05D005233 1.2e-12 76.6 88 43.2
AUR62022459 Chenopodium quinoa HOM05D004113 ORTHO05D005233 1.6e-12 76.3 85 42.4
SGA_v2.0_scaffold355G49762 Striga asiatica HOM05D004113 ORTHO05D005233 1.6e-12 76.3 76 48.7
TAR628G0877 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.6e-12 76.3 83 45.8
Aqoxy5G02176 Aquilegia oxysepala HOM05D004113 ORTHO05D005233 4.6e-12 74.7 85 41.2
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 4.6e-12 74.7 86 38.4
BcaB04g19979 Brassica carinata HOM05D004113 ORTHO05D005233 4.6e-12 74.7 85 40.0
AUR62040065 Chenopodium quinoa HOM05D004113 ORTHO05D005233 4.6e-12 74.7 87 40.2
Gorai.011G116700 Gossypium raimondii HOM05D004113 ORTHO05D005233 6.0e-12 74.3 81 39.5
Sed0024266 Sechium edule HOM05D004113 ORTHO05D005233 7.8e-12 73.9 88 40.9
AT5G64620 Arabidopsis thaliana HOM05D004113 ORTHO05D005233 1.3e-11 73.2 86 38.4
Gohir.D10G106500 Gossypium hirsutum HOM05D004113 ORTHO05D005233 1.3e-11 73.2 77 41.6
BolC3t18417H Brassica oleracea HOM05D004113 ORTHO05D005233 1.7e-11 72.8 85 40.0
Gohir.A10G084907 Gossypium hirsutum HOM05D004113 ORTHO05D005233 1.7e-11 72.8 82 40.2
Sc01g0006950 Simmondsia chinensis HOM05D004113 ORTHO05D005233 1.7e-11 72.8 93 40.9
Os08g0108100 Oryza sativa ssp. japonica HOM05D004113 ORTHO05D005233 3.0e-11 72.0 78 43.6
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 3.0e-11 72.0 85 38.8
BcaC01g02693 Brassica carinata HOM05D004113 ORTHO05D005233 3.9e-11 71.6 85 38.8
A06p31350 Brassica napus HOM05D004113 ORTHO05D005233 3.9e-11 71.6 85 38.8
C03p61570 Brassica napus HOM05D004113 ORTHO05D005233 3.9e-11 71.6 85 38.8
A09p08750 Brassica napus HOM05D004113 ORTHO05D005233 5.1e-11 71.2 96 36.5
BraA09t36524Z Brassica rapa HOM05D004113 ORTHO05D005233 5.1e-11 71.2 96 36.5
BcaB02g09804 Brassica carinata HOM05D004113 ORTHO05D005233 8.7e-11 70.5 85 40.0
BraA06t26077Z Brassica rapa HOM05D004113 ORTHO05D005233 8.7e-11 70.5 85 38.8
Zm00001eb174300 Zea mays HOM05D004113 ORTHO05D005233 8.7e-11 70.5 77 44.2
BcaC04g23305 Brassica carinata HOM05D004113 ORTHO05D005233 1.1e-10 70.1 85 38.8
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 1.1e-10 70.1 85 38.8
C09p09900 Brassica napus HOM05D004113 ORTHO05D005233 1.5e-10 69.7 85 38.8
BolC9t53899H Brassica oleracea HOM05D004113 ORTHO05D005233 1.5e-10 69.7 85 38.8
Os12g0283400 Oryza sativa ssp. japonica HOM05D004113 ORTHO05D005233 2.5e-10 68.9 88 39.8
Zm00001eb260280 Zea mays HOM05D004113 ORTHO05D005233 4.3e-10 68.2 81 42.0
Aa31LG1G17330 Aethionema arabicum HOM05D004113 ORTHO05D005233 1.6e-09 66.2 82 40.2
HPP92_012690 Vanilla planifolia HOM05D004113 ORTHO05D005233 2.1e-09 65.9 82 45.1
HPP92_012697 Vanilla planifolia HOM05D004113 ORTHO05D005233 2.1e-09 65.9 82 45.1
CiPaw.04G086900 Carya illinoinensis HOM05D004113 ORTHO05D005233 4.8e-09 64.7 60 51.7
PSO017G1826 Papaver somniferum HOM05D004113 ORTHO05D005233 2.9e-06 55.5 84 36.9
PSO017G2443 Papaver somniferum HOM05D004113 ORTHO05D005233 2.9e-06 55.5 85 38.8
PSO837G0029 Papaver somniferum HOM05D004113 ORTHO05D005233 2.9e-06 55.5 84 36.9


User provided reference genes

Program Settings