Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 0.0e+00 1140.2 549 100.0
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 4.8e-193 678.3 547 61.4
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 4.9e-185 651.7 484 64.7
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 4.5e-183 645.2 479 64.5
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 2.3e-182 642.9 492 63.2
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 6.6e-182 641.3 478 61.9
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.1e-181 640.6 492 62.8
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 3.3e-181 639.0 486 63.0
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 3.3e-181 639.0 487 62.0
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 4.0e-179 632.1 494 62.1
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 6.8e-179 631.3 482 61.2
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.4e-178 629.0 545 57.1
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 9.8e-178 627.5 555 57.7
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 1.7e-177 626.7 539 57.0
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 8.3e-177 624.4 478 62.8
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 8.3e-177 624.4 528 57.8
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.4e-176 623.6 495 60.4
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.9e-176 623.2 503 58.8
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.9e-176 623.2 509 59.3
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 3.2e-176 622.5 481 60.9
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 3.2e-176 622.5 482 61.2
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 2.7e-175 619.4 486 59.7
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 3.5e-175 619.0 469 64.2
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 3.5e-175 619.0 480 60.6
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 7.8e-175 617.8 530 55.7
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 7.8e-175 617.8 478 60.5
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 3.9e-174 615.5 483 61.5
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.9e-174 615.5 478 60.5
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 5.0e-174 615.1 541 56.4
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 6.6e-174 614.8 483 62.3
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 8.6e-174 614.4 480 60.0
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 8.6e-174 614.4 485 61.9
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.5e-173 613.6 505 58.4
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.5e-173 612.8 478 60.3
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.3e-173 612.5 507 58.6
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.3e-173 612.5 507 58.6
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 3.3e-173 612.5 484 62.2
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.6e-173 611.7 497 59.4
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 4.7e-172 608.6 484 59.3
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 8.0e-172 607.8 494 60.7
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 1.8e-171 606.7 507 59.4
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.8e-171 606.7 566 55.1
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 4.0e-171 605.5 491 58.9
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.2e-171 605.1 516 57.6
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 1.2e-170 604.0 471 62.8
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.5e-170 603.6 480 60.6
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 5.8e-170 601.7 495 57.8
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 5.8e-170 601.7 482 59.1
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 5.8e-170 601.7 493 58.4
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 7.5e-170 601.3 492 58.1
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.7e-169 600.1 482 58.5
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.7e-169 600.1 513 55.8
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.9e-169 599.4 468 60.0
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.4e-168 597.0 503 58.1
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 5.4e-168 595.1 488 59.8
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 5.4e-168 595.1 487 58.9
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.1e-167 593.2 480 57.5
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 4.6e-167 592.0 510 55.3
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 4.6e-167 592.0 491 57.8
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 3.9e-166 589.0 483 58.4
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 5.1e-166 588.6 480 58.3
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 6.6e-166 588.2 481 58.8
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 2.5e-165 586.3 521 55.5
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 3.3e-165 585.9 481 57.2
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 7.3e-165 584.7 486 56.8
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 9.5e-165 584.3 487 56.7
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.1e-164 583.2 480 58.3
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 3.6e-164 582.4 479 56.8
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.8e-163 580.1 491 57.8
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 3.1e-163 579.3 487 56.9
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 4.0e-163 578.9 486 55.8
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 6.8e-163 578.2 588 50.9
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 1.2e-162 577.4 481 56.3
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.5e-162 577.0 517 55.5
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 3.4e-162 575.9 489 57.3
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 4.4e-162 575.5 483 57.3
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 4.4e-162 575.5 502 54.8
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 6.4e-161 571.6 510 53.9
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 2.4e-160 569.7 476 58.4
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 3.9e-158 562.4 488 56.1
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.9e-157 560.1 486 54.9
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 3.3e-157 559.3 486 55.1
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.2e-156 557.4 452 60.2
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 6.2e-156 555.1 486 54.7
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.1e-155 554.3 446 59.4
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.4e-155 553.1 481 54.7
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 5.2e-155 552.0 488 55.5
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.6e-154 548.1 427 61.4
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.2e-153 546.6 541 51.2
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 8.7e-150 534.6 515 50.5
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 2.4e-147 526.6 391 63.4
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.9e-137 493.0 418 57.7
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 6.4e-137 491.9 381 61.4
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 3.0e-134 483.0 487 50.5
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 2.1e-132 476.9 510 49.8
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 2.8e-132 476.5 371 60.9
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.0e-129 468.0 398 58.0
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.3e-129 467.6 435 53.8
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 1.2e-127 461.1 390 55.4
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.5e-125 454.1 545 47.0
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 9.6e-125 451.4 456 47.6
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 4.8e-124 449.1 349 59.9
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.2e-122 444.5 352 60.5
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.0e-118 431.4 515 45.0
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 5.1e-118 429.1 405 54.6
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-115 421.0 336 59.8
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.4e-115 421.0 510 43.5
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.6e-114 416.8 497 41.9
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.7e-113 414.1 337 59.6
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 1.9e-112 410.6 350 57.7
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 5.7e-109 399.1 503 45.3
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 9.7e-109 398.3 351 55.3
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.1e-107 394.8 325 59.4
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 8.5e-105 385.2 295 60.0
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 2.5e-104 383.6 478 44.4
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.1e-96 358.2 302 57.9
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.6e-95 354.4 302 57.3
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 4.1e-91 339.7 244 64.8
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 5.2e-86 322.8 259 61.8
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.7e-84 317.8 278 59.0
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.1e-83 315.1 252 57.1
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 1.0e-81 308.5 482 34.2
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.0e-78 296.6 214 62.1
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 7.7e-74 282.3 216 60.6
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.5e-64 250.8 236 53.8
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.9e-60 237.3 146 73.3
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.2e-58 231.9 163 63.2
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.1e-51 206.8 162 58.6
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.5e-48 195.7 160 55.6
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 8.1e-47 192.6 133 67.7
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 5.2e-38 163.3 166 47.6
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.6e-31 141.7 122 54.1
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.7e-28 131.7 212 39.2
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 2.4e-27 127.9 128 49.2
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.6e-26 125.2 158 47.5
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.1e-26 124.8 150 42.0
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 2.7e-26 124.4 91 67.0
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 2.3e-25 121.3 96 61.5
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 8.7e-25 119.4 103 56.3
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 3.3e-24 117.5 91 63.7
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.7e-20 105.1 88 61.4
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 2.6e-13 81.3 102 45.1
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 1.3e-09 68.9 70 48.6
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.9e-09 67.4 72 45.8


User provided reference genes

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