Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.4e-165 586.3 297 100.0
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.8e-117 426.4 301 76.1
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 3.1e-101 372.5 297 66.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.0e-100 369.8 293 65.2
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 3.4e-100 369.0 296 64.9
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.9e-99 365.9 305 64.3
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 4.9e-99 365.2 308 63.6
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 6.4e-99 364.8 292 65.8
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 8.4e-99 364.4 300 62.3
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 4.2e-98 362.1 262 68.7
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 5.4e-98 361.7 312 62.2
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 9.3e-98 360.9 302 62.9
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 2.1e-97 359.8 290 63.1
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.7e-97 359.4 308 64.6
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 2.7e-97 359.4 307 63.5
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.0e-97 358.2 293 64.8
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 6.0e-97 358.2 293 64.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 6.0e-97 358.2 308 62.7
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 7.8e-97 357.8 295 65.1
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.0e-96 357.5 256 70.7
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.0e-96 357.5 290 64.8
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 3.0e-96 355.9 262 67.6
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.0e-96 355.9 276 67.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 3.0e-96 355.9 282 63.1
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 3.0e-96 355.9 296 63.5
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 5.1e-96 355.1 285 63.9
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 5.1e-96 355.1 292 63.0
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 8.7e-96 354.4 261 68.6
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 8.7e-96 354.4 288 62.8
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 8.7e-96 354.4 276 66.7
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-95 354.0 277 65.3
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-95 354.0 265 68.3
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.1e-95 354.0 265 68.3
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.5e-95 353.6 311 63.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.9e-95 353.2 290 63.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 2.5e-95 352.8 271 66.8
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 4.3e-95 352.1 274 66.1
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.3e-95 352.1 261 68.2
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 4.3e-95 352.1 293 63.1
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.3e-95 352.1 293 63.1
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.6e-95 351.7 256 68.8
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.3e-94 350.5 275 65.8
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.6e-94 350.1 293 62.8
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.6e-94 350.1 300 63.0
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 2.1e-94 349.7 294 61.6
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.1e-94 349.7 282 64.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.8e-94 349.4 305 61.6
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 4.8e-94 348.6 249 67.9
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 4.8e-94 348.6 289 63.3
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 6.2e-94 348.2 265 67.2
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 6.2e-94 348.2 265 67.2
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 6.2e-94 348.2 303 61.7
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 8.1e-94 347.8 274 65.0
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 8.1e-94 347.8 274 65.0
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.1e-93 347.4 293 60.8
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.4e-93 347.1 294 64.6
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.8e-93 346.7 294 62.6
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.8e-93 346.7 272 65.1
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.4e-93 346.3 250 67.2
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 2.4e-93 346.3 294 62.9
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 2.4e-93 346.3 306 62.1
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 4.0e-93 345.5 311 61.7
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.3e-93 345.1 256 65.6
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 5.3e-93 345.1 249 66.7
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 5.3e-93 345.1 249 66.7
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.9e-93 344.7 265 65.7
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 6.9e-93 344.7 283 61.8
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 9.0e-93 344.4 279 65.2
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 9.0e-93 344.4 250 66.8
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 9.0e-93 344.4 306 61.8
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 2.0e-92 343.2 305 62.3
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.3e-91 340.5 312 59.3
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.2e-91 339.7 277 62.8
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 2.2e-91 339.7 320 58.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 2.9e-91 339.3 256 65.2
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 4.9e-91 338.6 299 61.2
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 8.4e-91 337.8 259 65.3
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.1e-90 337.4 335 57.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.9e-90 336.7 306 58.5
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 2.4e-90 336.3 306 61.1
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.4e-90 336.3 265 63.0
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.2e-90 335.9 268 65.3
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 4.2e-90 335.5 265 62.6
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 5.4e-90 335.1 235 68.9
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 7.1e-90 334.7 290 60.7
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 7.1e-90 334.7 305 61.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.6e-89 333.6 271 63.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.6e-89 333.6 298 60.1
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.5e-89 332.4 262 65.3
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 3.5e-89 332.4 276 63.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 4.6e-89 332.0 248 65.7
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.7e-88 327.8 270 63.7
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.1e-87 327.4 278 61.5
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 4.3e-87 325.5 275 61.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 7.4e-87 324.7 267 59.9
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.6e-86 323.6 323 59.4
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.6e-86 323.6 298 57.7
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 4.8e-86 322.0 268 63.8
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 4.8e-86 322.0 308 58.8
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 8.1e-86 321.2 256 64.8
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.8e-85 320.1 269 59.5
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 2.4e-85 319.7 275 62.2
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 3.1e-85 319.3 265 60.8
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 6.9e-85 318.2 286 58.7
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.2e-84 317.4 266 60.9
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.5e-84 317.0 232 69.0
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.5e-84 317.0 260 63.5
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.5e-84 317.0 260 63.5
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.7e-83 313.5 274 58.8
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 8.4e-83 311.2 302 57.0
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.6e-81 307.0 255 63.9
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.0e-80 304.3 249 60.6
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 3.0e-80 302.8 251 62.9
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.0e-80 302.8 254 58.3
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 3.1e-77 292.7 315 51.4
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 5.3e-77 292.0 269 59.5
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.9e-75 285.4 287 54.4
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 4.2e-74 282.3 247 59.5
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 7.9e-73 278.1 258 55.4
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.8e-72 276.9 248 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.9e-71 273.5 266 53.0
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.2e-70 270.0 244 56.1
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.2e-65 254.2 259 51.0
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.0e-64 251.1 267 49.1
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 2.8e-62 243.0 268 50.4
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 6.3e-62 241.9 176 70.5
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 7.7e-60 235.0 213 61.5
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-57 227.6 190 61.1
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.0e-56 223.0 213 54.0
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 5.3e-53 212.2 255 48.2
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 4.2e-50 202.6 142 69.7
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.8e-48 197.2 142 67.6
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-47 194.5 287 40.4
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.7e-46 190.7 142 64.1
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.6e-44 183.3 178 56.7
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.6e-44 183.3 120 74.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.3e-43 181.0 123 72.4
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 9.7e-39 164.9 122 64.8
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.3e-38 164.5 305 36.7
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-37 161.0 245 43.7
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 3.5e-36 156.4 130 63.8
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 1.5e-34 151.0 253 37.2
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 3.7e-30 136.3 240 36.2
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.8e-27 126.3 84 67.9
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 7.2e-26 122.1 128 51.6
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.8e-25 120.2 156 50.6
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.3e-22 111.3 180 40.0
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 4.5e-20 102.8 82 59.8
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.8e-20 102.1 59 76.3
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.5e-18 97.8 72 61.1
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.5e-18 97.8 132 49.2
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.4e-16 91.3 86 55.8
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-15 88.2 187 39.6
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 1.1e-13 81.6 280 25.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.6e-12 77.8 62 61.3
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 2.0e-12 77.4 182 28.0
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.3e-11 74.7 50 78.0
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 8.6e-11 72.0 316 22.5
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.9e-10 70.9 151 28.5
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 2.9e-06 57.0 156 35.3


User provided reference genes

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