Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.8e-220 767.3 398 100.0
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 4.7e-198 694.5 403 91.3
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.6e-124 450.3 382 62.0
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.5e-122 443.0 396 60.6
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.7e-121 439.5 416 59.9
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 2.6e-119 433.0 380 60.8
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.2e-118 429.9 402 59.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.8e-117 426.8 383 59.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 2.4e-117 426.4 383 60.6
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.1e-117 426.0 397 59.4
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 7.0e-117 424.9 398 58.0
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 9.1e-117 424.5 381 59.6
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.0e-116 423.3 400 57.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.0e-115 421.0 402 56.7
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.3e-115 420.6 384 59.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.7e-115 420.2 402 56.5
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 6.6e-115 418.3 383 58.5
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.5e-114 417.2 381 59.1
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.5e-114 417.2 427 58.3
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 3.3e-114 416.0 399 56.4
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.2e-114 415.6 383 58.2
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 9.5e-114 414.5 400 56.2
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.2e-113 414.1 383 59.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.2e-113 414.1 382 59.4
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.2e-113 414.1 381 57.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.6e-113 413.7 393 58.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.1e-113 413.3 381 57.7
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 2.8e-113 412.9 381 58.3
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 4.7e-113 412.1 434 56.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 8.0e-113 411.4 385 57.1
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.0e-112 411.0 379 59.4
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 2.3e-112 409.8 401 54.6
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 4.0e-112 409.1 393 57.0
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 6.8e-112 408.3 428 57.0
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 6.8e-112 408.3 396 56.3
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 8.9e-112 407.9 370 59.2
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.2e-111 407.5 363 59.5
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.5e-111 407.1 381 58.0
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.5e-111 407.1 391 58.1
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.6e-111 406.4 385 57.4
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.6e-111 406.4 382 57.9
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.4e-111 406.0 381 58.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 3.4e-111 406.0 420 58.6
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 4.4e-111 405.6 420 58.6
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 4.4e-111 405.6 388 58.5
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 5.7e-111 405.2 381 59.6
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 7.5e-111 404.8 430 57.0
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 7.5e-111 404.8 415 54.7
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 7.5e-111 404.8 384 57.0
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 7.5e-111 404.8 372 57.0
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 9.8e-111 404.4 363 58.7
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 9.8e-111 404.4 383 59.5
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.3e-110 404.1 362 59.4
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.3e-110 404.1 394 54.8
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.7e-110 403.7 362 58.3
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.2e-110 403.3 365 59.7
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.2e-110 403.3 365 59.5
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 2.2e-110 403.3 377 58.9
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 2.8e-110 402.9 431 55.5
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 2.8e-110 402.9 381 57.5
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 3.7e-110 402.5 394 56.1
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 8.3e-110 401.4 393 54.7
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 8.3e-110 401.4 398 55.3
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.4e-109 400.6 416 53.4
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.8e-109 400.2 378 58.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.8e-109 400.2 378 58.7
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 2.4e-109 399.8 401 55.4
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 2.4e-109 399.8 372 55.6
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 3.2e-109 399.4 385 57.1
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 5.4e-109 398.7 362 58.6
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 5.4e-109 398.7 378 58.7
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.4e-109 398.7 378 58.7
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.4e-109 398.7 378 58.7
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.4e-109 398.7 385 58.2
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 9.2e-109 397.9 408 57.4
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 9.2e-109 397.9 390 55.1
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.2e-108 397.5 383 58.0
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.0e-108 396.7 405 57.5
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-108 396.7 359 58.2
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-108 396.7 361 58.2
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.7e-108 396.4 363 58.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 2.7e-108 396.4 383 56.9
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 4.5e-108 395.6 362 58.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.9e-108 395.2 377 56.8
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 5.9e-108 395.2 361 57.9
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 5.9e-108 395.2 361 57.9
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.7e-107 393.7 378 56.6
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.3e-107 393.3 387 56.3
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.9e-107 392.9 398 53.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.1e-106 391.0 390 54.6
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 3.3e-106 389.4 387 54.5
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 7.3e-106 388.3 375 54.7
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 9.5e-106 387.9 371 56.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 9.5e-106 387.9 384 55.2
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.6e-105 387.1 451 51.0
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.6e-105 387.1 367 56.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 8.0e-105 384.8 372 56.7
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.8e-104 383.6 369 56.6
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.1e-104 382.9 363 56.5
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.2e-103 380.9 393 55.0
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 7.5e-103 378.3 378 54.8
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 9.8e-103 377.9 388 52.3
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.7e-102 377.1 363 57.3
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.7e-102 377.1 383 52.7
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.7e-102 377.1 383 52.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.3e-102 374.8 386 53.4
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.1e-101 372.5 361 56.0
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.1e-101 372.5 406 55.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.0e-101 371.7 358 56.4
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.2e-100 370.9 345 58.6
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 4.6e-100 369.0 363 55.9
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.8e-100 368.2 370 52.7
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 5.0e-99 365.5 389 51.4
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.0e-99 365.5 369 52.6
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.6e-99 365.2 368 52.4
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.1e-98 364.4 405 54.6
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 2.8e-97 359.8 405 53.6
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.9e-90 337.0 397 47.1
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.6e-89 334.0 393 49.4
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 4.7e-89 332.4 293 61.4
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.3e-83 314.3 320 52.2
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.4e-77 294.3 278 59.7
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.4e-69 265.8 289 50.9
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.7e-68 263.5 420 41.0
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 4.3e-66 256.1 389 41.1
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.8e-62 243.0 222 57.7
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 6.2e-57 225.7 247 51.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 5.5e-53 212.6 216 50.9
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.1e-51 206.1 164 64.6
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.4e-48 197.2 139 73.4
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 5.3e-48 196.1 208 51.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.9e-46 190.3 143 68.5
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.2e-44 184.9 153 64.7
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.0e-43 181.8 289 38.4
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 5.7e-42 176.0 366 35.5
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.3e-41 174.9 145 64.1
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.2e-38 164.1 204 50.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 3.3e-18 97.1 110 52.7
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.0e-14 83.2 69 58.0
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.2e-12 78.6 76 51.3
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.2e-11 73.2 313 26.2
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.2e-07 62.0 148 31.8
Mapoly0136s0032 Marchantia polymorpha HOM05D003180 ORTHO05D003664 5.0e-06 56.6 145 30.3
Pp3c24_9340 Physcomitrium patens HOM05D003180 ORTHO05D003664 6.5e-06 56.2 137 33.6


User provided reference genes

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