Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G1062 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 3.1e-154 548.5 292 100.0
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 4.5e-113 411.8 265 86.8
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.4e-50 204.1 245 54.3
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 3.9e-48 196.1 266 50.8
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 5.6e-47 192.2 263 51.7
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 6.2e-46 188.7 265 48.7
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 2.9e-43 179.9 269 46.5
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 3.2e-42 176.4 262 48.5
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 3.2e-42 176.4 267 48.3
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 1.6e-41 174.1 265 45.7
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 1.0e-40 171.4 265 46.4
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 6.6e-40 168.7 273 44.7
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 1.9e-39 167.2 254 48.4
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 2.5e-39 166.8 267 48.7
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 4.3e-39 166.0 267 46.4
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 1.3e-38 164.5 266 44.4
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 1.3e-38 164.5 248 47.2
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.6e-38 164.1 272 45.2
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 4.8e-38 162.5 263 45.6
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 8.1e-38 161.8 266 45.5
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 3.1e-37 159.8 263 45.2
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 3.1e-37 159.8 266 44.7
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 4.5e-36 156.0 265 45.3
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 5.8e-36 155.6 255 45.5
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 7.6e-36 155.2 265 42.3
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 2.9e-35 153.3 265 44.9
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 4.9e-35 152.5 267 44.9
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 4.9e-35 152.5 264 44.3
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 4.9e-35 152.5 265 44.9
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 8.4e-35 151.8 280 42.1
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 1.1e-34 151.4 261 46.7
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.4e-34 151.0 265 45.7
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 1.4e-34 151.0 265 45.7
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 5.4e-34 149.1 265 44.9
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 7.1e-34 148.7 280 41.8
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 7.1e-34 148.7 264 44.3
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 7.1e-34 148.7 267 43.4
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 1.2e-33 147.9 306 39.9
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 2.7e-33 146.7 265 41.9
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 2.7e-33 146.7 267 43.1
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 1.8e-32 144.1 265 43.0
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 2.3e-32 143.7 264 42.0
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 5.1e-32 142.5 268 42.2
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 6.7e-32 142.1 267 40.8
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 1.1e-31 141.4 252 45.2
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.9e-31 140.6 265 43.8
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 1.9e-31 140.6 263 43.3
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 2.5e-31 140.2 264 42.0
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 3.3e-31 139.8 270 44.1
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 5.6e-31 139.0 257 45.5
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 7.4e-31 138.7 266 42.9
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 1.3e-30 137.9 265 39.2
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 2.1e-30 137.1 278 43.2
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 2.8e-30 136.7 262 41.2
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.7e-30 136.3 267 42.3
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 4.8e-30 136.0 266 42.9
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 8.1e-30 135.2 266 41.4
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 1.8e-29 134.0 266 40.6
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 5.3e-29 132.5 263 42.6
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 1.2e-28 131.3 265 41.5
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 1.5e-28 131.0 253 42.7
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 2.0e-28 130.6 284 40.5
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 2.6e-28 130.2 270 39.3
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 5.8e-28 129.0 289 40.5
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 5.8e-28 129.0 266 38.0
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.3e-27 127.9 268 41.4
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 3.8e-27 126.3 272 40.8
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 2.4e-26 123.6 274 38.0
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 3.2e-26 123.2 263 42.2
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 7.1e-26 122.1 263 41.8
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 7.1e-26 122.1 261 38.7
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 1.2e-25 121.3 279 39.4
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 1.2e-25 121.3 266 39.1
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 1.6e-25 120.9 271 38.7
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.6e-25 120.9 266 39.5
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.1e-25 120.6 265 40.8
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 2.1e-25 120.6 268 39.6
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 2.7e-25 120.2 265 38.1
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 4.6e-25 119.4 277 37.2
Os05g0513300 Oryza sativa ssp. japonica HOM05D004946 ORTHO05D006101 7.9e-25 118.6 259 35.9
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 6.7e-24 115.5 263 38.4
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 1.5e-23 114.4 269 36.8
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 2.5e-23 113.6 267 38.6
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 4.3e-23 112.8 276 38.0
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 5.6e-23 112.5 274 37.2
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 3.7e-22 109.8 263 39.5
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 4.8e-22 109.4 243 40.3
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 1.4e-21 107.8 262 38.9
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 1.4e-21 107.8 262 38.9
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 1.4e-21 107.8 262 38.9
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 1.4e-21 107.8 279 36.2
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 1.8e-21 107.5 279 36.2
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 2.4e-21 107.1 258 39.5
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 2.4e-21 107.1 268 36.9
CANSAT80G2575 Cannabis sativa HOM05D004946 ORTHO05D006101 2.4e-21 107.1 105 59.0
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 5.3e-21 105.9 266 36.8
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 6.9e-21 105.5 267 37.1
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 6.9e-21 105.5 267 37.5
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 2.0e-20 104.0 276 37.7
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 2.0e-20 104.0 216 40.7
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 1.7e-19 100.9 283 36.7
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 4.9e-19 99.4 271 36.9
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 1.9e-18 97.4 277 36.5
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 2.5e-18 97.1 275 36.4
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 1.2e-17 94.7 154 44.2
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 1.6e-17 94.4 270 36.7
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 2.7e-17 93.6 218 39.9
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 2.7e-17 93.6 263 33.1
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 1.3e-16 91.3 270 35.2
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 1.8e-16 90.9 264 37.5
BolC6t39834H Brassica oleracea HOM05D004946 ORTHO05D006101 5.1e-16 89.4 191 39.8
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 8.7e-16 88.6 264 36.0
Gohir.A08G094762 Gossypium hirsutum HOM05D004946 ORTHO05D006101 7.4e-15 85.5 62 67.7
Mapoly0070s0034 Marchantia polymorpha HOM05D004266 ORTHO05D005151 1.6e-14 84.3 75 64.0
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.8e-14 83.6 178 39.3
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 3.7e-14 83.2 267 32.2
CBR_g33965 Chara braunii HOM05D004266 ORTHO05D005151 1.4e-13 81.3 80 56.2
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 3.1e-13 80.1 270 34.1
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.2e-12 78.2 218 37.2
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.0e-12 77.4 210 39.0
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 7.6e-12 75.5 283 31.4
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.8e-11 73.2 241 33.2
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.9e-10 70.9 207 35.7
SEGI_28516 Sequoiadendron giganteum HOM05D004946 ORTHO05D006101 1.9e-10 70.9 60 70.0
MD10G1041800 Malus domestica HOM05D004266 ORTHO05D005151 2.5e-10 70.5 263 33.1
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 2.5e-10 70.5 217 33.6
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 3.2e-10 70.1 73 50.7
Pp3c14_13370 Physcomitrium patens HOM05D004266 ORTHO05D005151 3.2e-10 70.1 229 34.5
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 2.7e-09 67.0 221 33.5
Oeu046919.1 Olea europaea HOM05D004266 ORTHO05D005151 3.6e-09 66.6 283 31.4
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 4.6e-09 66.2 258 31.0
FvH4_3g36821 Fragaria vesca HOM05D004946 ORTHO05D006101 6.1e-09 65.9 54 57.4
TWI34G1000 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 6.1e-09 65.9 223 31.4
Duzib116G0903 Durio zibethinus HOM05D004266 ORTHO05D005151 7.9e-09 65.5 209 31.6
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.3e-08 64.7 210 35.2
AagrBONN_evm.TU.Sc2ySwM_228.143 Anthoceros agrestis HOM05D004266 ORTHO05D005151 1.8e-08 64.3 170 40.6
QL02p035395 Quercus lobata HOM05D004266 ORTHO05D005151 2.3e-08 63.9 271 33.6
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 6.7e-08 62.4 258 31.0
TAR625G1274 Trochodendron aralioides HOM05D004266 ORTHO05D005151 1.5e-07 61.2 278 30.6
SGA_v2.0_scaffold37G14831 Striga asiatica HOM05D004946 ORTHO05D006101 1.9e-07 60.8 340 28.5
FAN20G1662 Fragaria x ananassa HOM05D000915 ORTHO05D005151 3.3e-07 60.1 234 31.2
Cfa018249 Carpinus fangiana HOM05D004266 ORTHO05D005151 4.3e-07 59.7 276 32.2
FAN27G0763 Fragaria x ananassa HOM05D004266 ORTHO05D005151 5.7e-07 59.3 242 30.6
Haze_17848 Corylus avellana HOM05D004266 ORTHO05D005151 7.4e-07 58.9 270 34.1
Dinv36591 Davidia involucrata HOM05D000943 ORTHO05D005151 9.7e-07 58.5 231 32.5
Potri.002G061200 Populus trichocarpa HOM05D004266 ORTHO05D005151 9.7e-07 58.5 118 35.6
Sabra02G0049600 Salix brachista HOM05D004266 ORTHO05D005151 9.7e-07 58.5 264 30.3
Duzib211G0120 Durio zibethinus HOM05D004266 ORTHO05D005151 1.3e-06 58.2 252 28.6
FvH4_2g12680 Fragaria vesca HOM05D004266 ORTHO05D005151 1.3e-06 58.2 242 30.2
Gohir.A05G247600 Gossypium hirsutum HOM05D004266 ORTHO05D005151 1.3e-06 58.2 211 28.4
CiPaw.16G006400 Carya illinoinensis HOM05D004266 ORTHO05D005151 1.6e-06 57.8 246 34.1
Thecc.08G196800 Theobroma cacao HOM05D004266 ORTHO05D005151 1.6e-06 57.8 208 29.8
Prupe.8G045900 Prunus persica HOM05D004266 ORTHO05D005151 2.8e-06 57.0 261 31.0
TWI60G1440 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 2.8e-06 57.0 234 30.3
FAN15G1722 Fragaria x ananassa HOM05D004266 ORTHO05D005151 3.7e-06 56.6 242 29.8
CSS0012598 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 4.8e-06 56.2 223 30.9
CSS0048022 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 4.8e-06 56.2 223 30.9
MCO06G063 Micromonas commoda HOM05D004266 ORTHO05D005151 8.2e-06 55.5 60 48.3


User provided reference genes

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