Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.3e-37 159.1 73 100.0
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.6e-27 124.4 65 83.1
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 6.1e-27 123.6 63 85.7
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 6.1e-27 123.6 65 83.1
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 8.0e-27 123.2 66 80.3
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.3e-26 121.7 63 84.1
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.3e-26 121.7 63 84.1
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 2.3e-26 121.7 63 84.1
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 6.8e-26 120.2 63 82.5
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 6.8e-26 120.2 71 77.5
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 6.8e-26 120.2 63 84.1
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.8e-26 119.8 63 81.0
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-25 119.4 70 72.9
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.0e-25 118.6 64 84.4
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.6e-25 118.2 63 82.5
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.6e-25 118.2 63 81.0
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.6e-25 118.2 63 82.5
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 5.7e-25 117.1 63 79.4
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 5.7e-25 117.1 64 79.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 7.5e-25 116.7 63 81.0
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 7.5e-25 116.7 63 79.4
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 7.5e-25 116.7 59 88.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 9.8e-25 116.3 64 78.1
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 9.8e-25 116.3 63 81.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 9.8e-25 116.3 63 77.8
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 9.8e-25 116.3 64 78.1
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 9.8e-25 116.3 63 79.4
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 1.3e-24 115.9 63 79.4
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.3e-24 115.9 63 79.4
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.3e-24 115.9 63 79.4
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.3e-24 115.9 63 79.4
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.7e-24 115.5 66 77.3
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.7e-24 115.5 63 77.8
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.2e-24 115.2 60 83.3
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.8e-24 114.8 63 79.4
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 2.8e-24 114.8 64 79.7
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 2.8e-24 114.8 63 77.8
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.7e-24 114.4 71 73.2
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.7e-24 114.4 63 81.0
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 4.9e-24 114.0 63 76.2
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 4.9e-24 114.0 64 78.1
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 4.9e-24 114.0 70 71.4
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 6.3e-24 113.6 63 79.4
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 6.3e-24 113.6 63 79.4
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 6.3e-24 113.6 63 77.8
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 6.3e-24 113.6 63 76.2
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 6.3e-24 113.6 63 77.8
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 8.3e-24 113.2 60 81.7
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 8.3e-24 113.2 71 74.6
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.1e-23 112.8 64 79.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.4e-23 112.5 63 76.2
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.4e-23 112.5 63 74.6
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.4e-23 112.5 63 74.6
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.4e-23 112.5 63 76.2
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 2.4e-23 111.7 64 76.6
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 2.4e-23 111.7 63 76.2
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.4e-23 111.7 64 79.7
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 3.1e-23 111.3 64 76.6
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.1e-23 111.3 63 76.2
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.1e-23 111.3 63 76.2
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 3.1e-23 111.3 63 76.2
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.1e-23 111.3 63 76.2
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.1e-23 111.3 64 78.1
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 4.1e-23 110.9 63 74.6
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.1e-23 110.9 63 76.2
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.1e-23 110.9 63 76.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 5.4e-23 110.5 69 71.0
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 5.4e-23 110.5 64 78.1
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 9.1e-23 109.8 63 76.2
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.2e-22 109.4 65 76.9
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.6e-22 109.0 63 76.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.6e-22 109.0 63 77.8
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.6e-22 109.0 63 74.6
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.6e-22 109.0 63 76.2
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 2.0e-22 108.6 70 70.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 2.7e-22 108.2 62 75.8
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.7e-22 108.2 64 78.1
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.7e-22 108.2 63 73.0
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.7e-22 108.2 63 73.0
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 3.5e-22 107.8 63 74.6
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.5e-22 107.8 64 75.0
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 3.5e-22 107.8 59 76.3
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.0e-21 106.3 56 83.9
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.0e-21 106.3 63 73.0
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.0e-21 106.3 64 70.3
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.3e-21 105.9 63 71.4
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.7e-21 105.5 63 69.8
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.3e-21 105.1 63 74.6
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 2.9e-21 104.8 63 71.4
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 8.6e-21 103.2 54 81.5
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.1e-20 102.8 60 73.3
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.1e-20 102.8 60 76.7
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.1e-20 102.8 60 71.7
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.9e-20 102.1 60 73.3
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.9e-20 102.1 63 73.0
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-20 101.7 63 71.4
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.5e-20 101.7 63 71.4
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-20 101.7 63 71.4
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.3e-20 101.3 67 67.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 4.2e-20 100.9 67 67.2
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 4.2e-20 100.9 67 65.7
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 4.2e-20 100.9 67 67.2
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 4.2e-20 100.9 67 67.2
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 4.2e-20 100.9 67 67.2
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 4.2e-20 100.9 67 67.2
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 4.2e-20 100.9 67 67.2
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 4.2e-20 100.9 64 71.9
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 5.5e-20 100.5 60 71.7
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 5.5e-20 100.5 60 71.7
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 5.5e-20 100.5 60 71.7
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.5e-20 100.5 60 75.0
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 7.2e-20 100.1 61 72.1
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 7.2e-20 100.1 63 71.4
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 7.2e-20 100.1 59 72.9
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 9.5e-20 99.8 63 71.4
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.6e-19 99.0 64 65.6
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 2.8e-19 98.2 59 72.9
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.7e-19 97.4 63 71.4
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 6.1e-19 97.1 63 69.8
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.4e-18 95.9 63 68.3
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 2.3e-18 95.1 52 75.0
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 3.0e-18 94.7 62 62.9
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 4.0e-18 94.4 63 68.3
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 5.2e-18 94.0 52 75.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 6.8e-18 93.6 63 69.8
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 6.8e-18 93.6 65 64.6
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 6.8e-18 93.6 52 75.0
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 6.8e-18 93.6 55 74.5
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 5.7e-17 90.5 49 77.6
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 7.5e-17 90.1 58 67.2
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-15 86.3 48 72.9
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 9.2e-15 83.2 65 55.4
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.3e-13 78.6 47 68.1
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.9e-13 78.2 43 74.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.1e-11 72.0 44 68.2
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.6e-11 71.2 61 49.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 5.2e-10 67.4 42 69.0
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 5.2e-10 67.4 42 69.0
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 9.8e-09 63.2 61 49.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 1.7e-08 62.4 34 85.3
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.1e-07 59.7 57 47.4
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.4e-07 58.5 32 75.0
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 3.2e-07 58.2 32 78.1
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.2e-06 56.2 32 81.2
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.6e-06 55.8 32 81.2
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.7e-06 55.1 32 78.1
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.7e-06 55.1 32 78.1


User provided reference genes

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