Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 5.0e-251 870.5 415 100.0
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 8.4e-105 384.8 353 51.0
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 9.6e-101 371.3 355 49.0
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.1e-99 366.3 353 50.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.1e-99 366.3 351 49.9
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 5.8e-98 362.1 354 49.2
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.1e-96 357.8 355 48.7
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.4e-96 357.5 352 48.6
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.4e-96 357.5 354 48.3
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 4.2e-96 355.9 361 47.4
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 4.2e-96 355.9 351 49.3
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 1.6e-95 354.0 352 48.0
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 2.7e-95 353.2 354 47.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 6.0e-95 352.1 357 48.7
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.3e-94 350.9 352 48.0
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.8e-94 350.5 349 47.6
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.0e-94 349.7 355 47.0
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 8.7e-94 348.2 354 48.0
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 5.6e-93 345.5 358 46.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 7.4e-93 345.1 351 47.0
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 9.6e-93 344.7 354 46.6
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 2.1e-92 343.6 355 47.0
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 3.6e-92 342.8 352 46.9
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 4.8e-92 342.4 354 47.7
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 8.1e-92 341.7 356 47.8
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.8e-91 340.5 357 47.3
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 4.0e-91 339.3 354 46.9
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 4.0e-91 339.3 350 45.7
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 1.5e-90 337.4 356 46.9
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.0e-90 337.0 352 48.0
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 2.6e-90 336.7 355 47.6
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 2.6e-90 336.7 386 44.0
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 2.6e-90 336.7 355 45.1
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.8e-90 335.5 386 43.8
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.6e-90 335.1 349 45.6
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.7e-89 334.0 350 46.9
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.2e-89 333.6 386 43.8
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 3.8e-89 332.8 352 48.0
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.1e-88 331.3 350 46.3
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.9e-88 330.5 350 45.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-88 330.1 349 45.6
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-88 330.1 349 45.6
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 4.2e-88 329.3 359 43.5
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 5.5e-88 328.9 350 45.1
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 7.1e-88 328.6 350 47.1
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 7.1e-88 328.6 350 46.3
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 9.3e-88 328.2 351 45.9
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 4.6e-87 325.9 349 44.1
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 6.0e-87 325.5 350 45.7
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.3e-86 324.3 352 44.9
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 3.0e-86 323.2 342 48.0
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 5.1e-86 322.4 350 46.0
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 6.7e-86 322.0 352 44.6
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 8.7e-86 321.6 358 45.3
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.1e-85 321.2 355 44.5
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.5e-85 320.9 354 45.8
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.9e-85 320.5 350 46.0
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.9e-85 320.5 356 44.4
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.9e-85 320.5 354 43.5
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.9e-85 320.5 355 44.8
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 4.3e-85 319.3 352 44.6
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 5.6e-85 318.9 349 45.3
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 5.6e-85 318.9 352 45.2
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 7.4e-85 318.5 349 45.3
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 7.4e-85 318.5 350 45.7
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 9.6e-85 318.2 353 43.9
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.3e-84 317.8 347 45.0
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.3e-84 317.8 352 42.6
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.6e-84 317.4 354 44.6
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.6e-84 317.4 340 47.6
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.6e-84 317.4 350 45.7
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.1e-84 317.0 350 44.6
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.1e-84 317.0 350 45.7
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.8e-84 316.6 345 44.9
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 8.1e-84 315.1 353 42.8
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-83 314.7 349 44.7
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.8e-83 313.9 355 42.5
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 5.3e-83 312.4 356 44.4
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 5.3e-83 312.4 347 42.9
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.9e-83 312.0 356 43.5
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 9.0e-83 311.6 349 42.4
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.6e-82 310.1 355 42.8
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 4.5e-82 309.3 345 46.7
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 7.6e-82 308.5 351 43.0
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.0e-81 308.1 352 43.8
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.3e-81 307.8 352 44.0
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.3e-81 307.8 352 42.3
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.7e-81 307.4 353 41.6
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 2.2e-81 307.0 349 43.6
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 6.5e-81 305.4 349 43.8
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.9e-80 303.9 370 41.1
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 4.2e-80 302.8 347 41.8
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.6e-79 300.8 335 46.0
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 3.5e-79 299.7 353 41.4
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.8e-78 297.4 353 41.6
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 8.7e-78 295.0 353 41.4
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.5e-77 294.3 338 45.3
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 3.7e-76 289.7 358 42.7
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 6.9e-75 285.4 354 43.2
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.2e-74 284.6 356 42.1
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.5e-74 284.3 350 42.9
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 4.5e-74 282.7 333 42.9
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.3e-73 281.2 352 41.2
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 2.2e-73 280.4 351 42.2
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 2.2e-73 280.4 356 41.0
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.8e-73 279.6 362 41.7
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 3.8e-73 279.6 358 39.7
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 8.5e-73 278.5 354 40.7
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.9e-72 277.3 354 41.2
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 3.2e-72 276.6 362 37.8
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.2e-72 276.2 353 40.2
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.2e-72 276.2 354 41.2
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 5.5e-72 275.8 354 41.0
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 5.5e-72 275.8 354 41.0
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 2.1e-71 273.9 396 40.2
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.0e-70 271.6 351 39.3
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.7e-70 268.5 290 44.5
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.5e-69 267.7 353 38.5
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.3e-68 264.6 352 39.2
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.3e-68 264.6 351 39.0
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 6.3e-68 262.3 352 39.5
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 4.5e-66 256.1 327 41.3
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.9e-62 243.0 346 37.0
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 5.1e-62 242.7 336 34.8
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 4.1e-59 233.0 336 37.5
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 8.5e-57 225.3 236 46.6
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.9e-54 216.5 353 30.6
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.2e-50 204.9 343 32.7
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.6e-50 204.5 355 33.0
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 9.7e-45 185.3 260 35.0
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.7e-39 167.2 346 31.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.0e-39 165.6 207 40.1
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.1e-35 155.2 372 26.1
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.8e-35 154.5 203 41.4
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.6e-34 151.4 140 46.4
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.9e-25 120.6 90 54.4
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.3e-24 115.9 95 50.5
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.3e-17 95.1 150 30.7
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 5.0e-17 93.2 412 23.1
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.0e-17 93.2 88 44.3
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 4.3e-16 90.1 63 58.7
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 2.8e-15 87.4 103 45.6
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 1.9e-11 74.7 65 44.6
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 8.1e-07 59.3 62 38.7


User provided reference genes

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