Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.9e-171 604.7 312 100.0
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 7.1e-149 530.8 304 91.8
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.2e-64 249.6 324 46.0
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 6.6e-62 241.9 326 46.3
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.9e-59 231.5 319 43.6
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 7.1e-56 221.9 316 44.0
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 3.3e-53 213.0 312 45.8
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 8.9e-51 204.9 336 40.8
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.5e-50 204.1 337 38.9
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 7.6e-50 201.8 319 41.7
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.3e-49 201.1 324 41.7
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.1e-48 198.0 332 40.1
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.4e-48 197.6 330 42.1
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.9e-48 197.2 324 41.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.9e-48 197.2 338 39.9
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 2.4e-48 196.8 331 43.2
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.4e-48 196.8 322 41.6
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 3.2e-48 196.4 312 40.7
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 4.1e-48 196.1 327 41.3
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 9.2e-48 194.9 325 40.6
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.6e-47 192.6 332 41.3
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 4.6e-47 192.6 338 41.7
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 6.0e-47 192.2 332 41.3
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 6.0e-47 192.2 331 40.5
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.0e-46 191.4 317 41.3
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.0e-46 191.4 322 40.4
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.3e-46 191.0 332 41.3
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.7e-46 190.7 340 41.2
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 3.0e-46 189.9 330 42.1
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.6e-46 188.7 309 42.7
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 6.6e-46 188.7 339 40.7
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.6e-46 188.7 306 40.2
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 6.6e-46 188.7 319 39.5
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 6.6e-46 188.7 336 39.9
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.6e-46 188.7 335 40.9
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.1e-45 188.0 325 39.7
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.1e-45 188.0 306 39.5
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.5e-45 187.6 325 39.4
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-45 187.6 326 40.2
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 2.5e-45 186.8 306 41.5
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 4.3e-45 186.0 336 39.3
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.3e-45 186.0 319 40.1
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.2e-44 184.5 347 37.8
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.1e-44 183.7 316 39.2
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.8e-44 183.3 324 41.0
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.6e-44 183.0 306 39.9
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.4e-43 181.0 329 38.0
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 2.4e-43 180.3 306 41.2
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 5.2e-43 179.1 302 39.4
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 5.2e-43 179.1 306 39.5
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.9e-43 178.7 306 38.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.9e-43 178.7 306 38.9
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.9e-43 178.7 337 39.8
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.5e-42 177.6 331 37.5
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.6e-42 176.8 301 40.2
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-42 176.4 318 39.6
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 4.4e-42 176.0 301 39.5
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.9e-42 174.9 306 38.6
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.7e-41 174.1 306 38.6
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.4e-40 171.0 333 39.6
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 1.4e-40 171.0 328 37.5
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.9e-40 170.6 307 38.8
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 2.4e-40 170.2 325 38.5
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 3.2e-40 169.9 306 38.6
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.2e-40 169.5 306 38.6
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.1e-40 168.7 306 38.6
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 9.3e-40 168.3 319 39.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-39 167.5 306 38.2
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.7e-39 166.8 320 35.3
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 3.5e-39 166.4 327 35.8
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 6.0e-39 165.6 323 37.5
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.0e-38 164.9 316 38.0
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.7e-38 164.1 332 37.3
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.0e-38 163.3 301 37.5
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 3.9e-38 162.9 331 37.8
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 5.1e-38 162.5 331 37.5
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 5.1e-38 162.5 326 38.0
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 5.1e-38 162.5 331 37.5
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 5.1e-38 162.5 344 35.8
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.1e-37 161.4 336 36.6
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.5e-37 161.0 319 36.7
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.5e-37 161.0 293 38.2
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.5e-37 160.2 303 37.6
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 3.3e-37 159.8 293 38.2
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 4.3e-37 159.5 331 36.3
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.3e-37 159.5 334 37.1
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.6e-36 157.5 305 36.4
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 2.8e-36 156.8 329 34.3
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 2.8e-36 156.8 293 37.9
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 4.8e-36 156.0 287 38.3
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 4.8e-36 156.0 313 36.1
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.1e-35 154.8 357 34.7
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-35 154.5 315 34.3
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-35 154.5 315 34.3
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.4e-35 154.5 325 34.2
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.4e-35 154.5 372 33.1
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.4e-35 153.7 315 35.2
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 6.9e-35 152.1 347 33.4
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.2e-34 151.4 314 34.1
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.5e-34 151.0 323 35.0
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 9.9e-34 148.3 318 32.7
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.7e-33 147.5 328 36.6
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 2.2e-33 147.1 291 36.8
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.9e-33 146.7 315 34.9
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 6.4e-33 145.6 315 34.3
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 3.2e-32 143.3 312 36.2
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.7e-31 140.2 234 40.2
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 7.9e-31 138.7 293 36.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.5e-29 133.7 338 35.2
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 5.6e-29 132.5 310 36.8
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 7.4e-29 132.1 313 32.3
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.8e-28 130.2 218 39.9
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 3.7e-28 129.8 313 33.2
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.2e-26 124.8 112 58.0
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-26 124.0 124 53.2
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-26 124.0 124 53.2
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 3.4e-26 123.2 112 57.1
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 7.6e-26 122.1 196 41.8
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 9.9e-26 121.7 112 57.1
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.9e-25 120.2 436 27.1
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.1e-24 118.2 113 55.8
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.4e-24 117.1 131 51.1
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 5.1e-22 109.4 112 52.7
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.1e-21 108.2 244 33.2
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 9.6e-21 105.1 288 29.5
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.0e-18 97.4 297 32.3
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.7e-17 94.4 305 30.8
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 2.1e-15 87.4 175 36.0
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 2.7e-15 87.0 175 35.4
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 3.5e-15 86.7 217 31.8
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 1.3e-14 84.7 309 28.8
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.5e-13 81.3 308 25.6
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 4.8e-12 76.3 265 26.0
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.1e-11 75.1 114 43.9
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.8e-11 74.3 275 29.5
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.0e-10 70.9 135 40.7
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-09 67.8 112 40.2
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.2e-08 63.5 115 39.1
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 7.2e-08 62.4 111 36.9
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 2.1e-07 60.8 286 26.9
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.9e-07 58.9 109 38.5
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.9e-06 56.6 309 25.9


User provided reference genes

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