Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.2e-289 998.4 581 100.0
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 7.4e-216 754.2 497 84.5
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 4.3e-115 419.5 652 43.7
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.4e-113 413.7 658 43.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 7.8e-109 398.7 463 51.6
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.0e-108 398.3 659 41.9
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 5.1e-108 396.0 673 45.2
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 4.8e-106 389.4 457 51.4
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 1.4e-105 387.9 641 42.1
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 2.4e-105 387.1 628 44.7
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 4.0e-105 386.3 442 52.0
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 4.5e-104 382.9 650 44.2
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 5.8e-104 382.5 651 43.0
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 9.9e-104 381.7 648 43.1
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 1.3e-103 381.3 394 56.6
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 8.4e-103 378.6 635 42.4
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.4e-102 377.9 397 58.9
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 3.2e-102 376.7 496 47.8
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 9.3e-102 375.2 330 63.9
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 4.6e-101 372.9 393 54.7
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 4.6e-101 372.9 505 46.7
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.3e-100 370.5 644 47.2
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 3.0e-100 370.2 484 45.9
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.9e-100 369.8 505 46.5
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 6.7e-100 369.0 494 50.6
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 6.7e-100 369.0 542 43.4
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 8.7e-100 368.6 356 63.8
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.1e-99 368.2 395 52.9
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.5e-99 367.9 381 56.2
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 2.5e-99 367.1 470 47.4
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 3.3e-99 366.7 343 62.7
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 4.3e-99 366.3 611 44.4
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 7.4e-99 365.5 386 54.1
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 7.4e-99 365.5 382 53.9
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 7.4e-99 365.5 493 46.2
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.6e-98 364.4 633 42.5
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 2.1e-98 364.0 487 47.0
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 6.2e-98 362.5 465 52.3
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 8.1e-98 362.1 382 53.7
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.8e-97 360.9 387 55.3
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 2.4e-97 360.5 628 39.5
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.1e-97 360.1 395 52.4
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.1e-97 360.1 384 53.9
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 5.3e-97 359.4 641 40.2
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 6.9e-97 359.0 392 52.6
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 2.6e-96 357.1 433 49.4
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 2.6e-96 357.1 654 40.1
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 4.5e-96 356.3 330 59.7
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 4.5e-96 356.3 640 40.8
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 7.6e-96 355.5 404 50.7
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 4.9e-95 352.8 466 46.1
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 8.4e-95 352.1 443 52.6
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 1.1e-94 351.7 456 53.5
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-94 351.3 500 46.2
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.4e-94 351.3 450 48.2
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.5e-94 350.5 407 49.6
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 3.2e-94 350.1 478 51.5
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 9.3e-94 348.6 382 52.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 9.3e-94 348.6 396 57.1
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 1.6e-93 347.8 394 51.8
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 7.9e-93 345.5 489 45.4
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.8e-92 344.4 379 51.7
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 3.9e-92 343.2 575 42.4
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 3.9e-92 343.2 515 47.4
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 5.1e-92 342.8 572 42.1
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 3.3e-91 340.1 472 44.5
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 4.3e-91 339.7 462 47.2
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 4.3e-91 339.7 507 44.6
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 5.6e-91 339.3 528 44.3
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 5.6e-91 339.3 492 49.6
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 1.3e-90 338.2 467 47.3
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.6e-90 337.8 451 51.2
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 6.2e-90 335.9 384 50.5
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 8.2e-90 335.5 520 44.0
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 2.4e-89 334.0 643 39.8
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 3.1e-89 333.6 439 52.2
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 5.3e-89 332.8 605 44.5
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.3e-89 332.8 643 40.6
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.9e-89 332.4 444 48.4
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.9e-89 332.4 444 48.4
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 2.0e-88 330.9 507 43.8
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.7e-87 327.8 504 44.2
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.2e-87 327.4 500 47.2
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 4.9e-87 326.2 597 40.7
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 4.9e-87 326.2 502 46.8
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.4e-86 324.7 554 42.2
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.2e-86 323.2 384 51.0
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 7.1e-86 322.4 356 55.9
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 7.1e-86 322.4 515 44.7
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.2e-85 321.6 483 43.3
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.2e-85 321.6 515 41.7
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 6.0e-85 319.3 416 47.4
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 3.9e-84 316.6 551 39.7
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 3.3e-83 313.5 385 50.1
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 3.7e-82 310.1 493 46.2
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 2.9e-79 300.4 532 42.7
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 9.4e-78 295.4 490 40.8
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 2.1e-77 294.3 513 40.0
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 6.7e-76 289.3 488 41.0
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 6.9e-73 279.3 603 36.8
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 2.1e-69 267.7 633 37.6
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 2.6e-64 250.8 395 40.3
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 1.4e-57 228.4 412 41.3
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 3.1e-57 227.3 216 60.2
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 2.0e-51 208.0 349 35.8
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.3e-50 205.3 307 46.3
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.1e-46 192.2 429 33.8
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.5e-46 191.8 337 37.1
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 6.8e-44 183.0 343 31.8
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 2.4e-41 174.5 266 43.2
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.7e-39 168.3 124 67.7
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 9.5e-38 162.5 384 33.6
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 6.1e-37 159.8 193 48.2
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 6.3e-34 149.8 111 69.4
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 1.1e-33 149.1 118 61.9
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.4e-33 148.7 168 53.6
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 3.2e-33 147.5 112 62.5
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 9.2e-33 146.0 518 25.7
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 1.6e-32 145.2 112 68.8
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 1.0e-31 142.5 118 58.5
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 1.0e-28 132.5 113 61.9
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.5e-27 128.6 322 37.9
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 5.8e-27 126.7 208 35.6
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 1.9e-25 121.7 89 62.9
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 9.2e-25 119.4 110 50.0
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.0e-24 116.7 441 30.4
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 7.8e-24 116.3 93 63.4
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.0e-23 115.9 317 34.4
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 3.9e-23 114.0 90 65.6
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.4e-17 93.6 224 27.2
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 2.8e-13 81.3 84 53.6
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 2.0e-11 75.1 117 42.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 2.4e-09 68.2 133 37.6
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 9.2e-09 66.2 133 40.6
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 9.2e-09 66.2 132 40.2
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 6.0e-08 63.5 147 29.3
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 5.1e-07 60.5 54 53.7
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.5e-06 58.9 75 49.3
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 3.3e-06 57.8 44 65.9


User provided reference genes

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