Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0675 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 2.1e-66 255.8 148 100.0
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 9.4e-51 203.8 119 86.6
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 3.0e-49 198.7 119 84.9
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 4.0e-49 198.4 119 84.0
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 5.2e-49 198.0 119 84.0
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 8.8e-49 197.2 119 84.9
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 8.8e-49 197.2 119 84.9
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.6e-48 195.7 119 84.0
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.6e-48 195.7 119 84.0
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 3.4e-48 195.3 119 84.0
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 4.4e-48 194.9 120 85.8
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 5.7e-48 194.5 119 83.2
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 1.3e-47 193.4 119 83.2
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 2.2e-47 192.6 119 82.4
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 2.8e-47 192.2 119 82.4
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 3.7e-47 191.8 119 81.5
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 6.3e-47 191.0 119 81.5
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.1e-46 190.3 119 80.7
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 1.4e-46 189.9 119 84.0
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 2.4e-46 189.1 119 80.7
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 2.4e-46 189.1 119 80.7
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 5.4e-46 188.0 119 79.0
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 7.0e-46 187.6 124 76.6
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 7.0e-46 187.6 119 81.5
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 9.1e-46 187.2 119 79.8
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 9.1e-46 187.2 119 78.2
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 1.6e-45 186.4 119 79.8
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.6e-45 186.4 119 80.7
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 3.5e-45 185.3 119 79.0
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 5.9e-45 184.5 119 76.5
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 7.7e-45 184.1 119 78.2
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 7.7e-45 184.1 119 79.0
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.7e-45 184.1 119 77.3
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 7.7e-45 184.1 119 77.3
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 1.0e-44 183.7 119 80.7
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.3e-44 183.3 119 79.0
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 1.3e-44 183.3 119 78.2
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 1.7e-44 183.0 119 77.3
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.7e-44 183.0 119 78.2
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 2.3e-44 182.6 119 76.5
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 2.9e-44 182.2 119 76.5
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 3.8e-44 181.8 119 77.3
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 5.0e-44 181.4 119 79.0
Oeu046439.1 Olea europaea HOM05D003466 ORTHO05D004102 5.0e-44 181.4 119 77.3
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 5.0e-44 181.4 120 75.8
GSVIVG01029154001 Vitis vinifera HOM05D003466 ORTHO05D004102 5.0e-44 181.4 122 80.3
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 6.5e-44 181.0 119 77.3
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.5e-43 179.9 119 77.3
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 1.5e-43 179.9 118 76.3
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 2.5e-43 179.1 117 79.5
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 2.5e-43 179.1 117 79.5
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 2.5e-43 179.1 117 79.5
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 3.3e-43 178.7 118 75.4
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 3.3e-43 178.7 105 83.8
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 9.5e-43 177.2 117 76.1
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 1.2e-42 176.8 105 85.7
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.6e-42 176.4 119 74.8
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.6e-42 176.4 119 74.8
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 1.6e-42 176.4 121 76.0
Cfa017016 Carpinus fangiana HOM05D003466 ORTHO05D004102 2.1e-42 176.0 115 78.3
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 2.1e-42 176.0 105 82.9
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 2.8e-42 175.6 119 73.9
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 3.6e-42 175.3 119 73.9
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 6.1e-42 174.5 119 74.8
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 1.4e-41 173.3 107 79.4
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 1.4e-41 173.3 119 74.8
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 1.4e-41 173.3 121 76.9
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 1.8e-41 172.9 119 73.9
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 1.8e-41 172.9 119 73.9
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 3.0e-41 172.2 109 79.8
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 5.2e-41 171.4 110 80.0
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 6.8e-41 171.0 122 77.0
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 8.9e-41 170.6 122 77.0
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 8.9e-41 170.6 105 82.9
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 1.2e-40 170.2 105 81.0
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 1.5e-40 169.9 119 74.8
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 2.0e-40 169.5 122 74.6
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 2.0e-40 169.5 121 73.6
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 2.6e-40 169.1 114 73.7
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 3.4e-40 168.7 123 74.0
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 5.7e-40 167.9 124 74.2
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 5.7e-40 167.9 120 74.2
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 7.5e-40 167.5 123 74.0
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.3e-39 166.8 113 74.3
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 1.7e-39 166.4 119 73.1
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 2.2e-39 166.0 123 73.2
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 2.8e-39 165.6 126 71.4
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 3.7e-39 165.2 105 78.1
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 4.9e-39 164.9 121 70.2
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 1.1e-38 163.7 117 69.2
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 1.4e-38 163.3 109 77.1
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 1.4e-38 163.3 122 73.0
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 2.4e-38 162.5 121 71.1
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 2.4e-38 162.5 109 76.1
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 4.1e-38 161.8 119 75.6
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 4.1e-38 161.8 117 73.5
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 9.2e-38 160.6 122 71.3
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 1.2e-37 160.2 117 71.8
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 1.6e-37 159.8 110 76.4
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 1.6e-37 159.8 120 69.2
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 4.5e-37 158.3 116 71.6
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 2.9e-36 155.6 112 72.3
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.1e-35 153.7 106 73.6
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 2.5e-35 152.5 114 66.7
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 9.5e-35 150.6 106 72.6
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 9.5e-35 150.6 121 71.1
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.1e-34 149.4 119 70.6
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.1e-34 149.4 119 70.6
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 3.0e-33 145.6 110 66.4
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 8.9e-33 144.1 105 63.8
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.5e-32 143.3 105 62.9
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 1.5e-32 143.3 105 64.8
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 5.8e-32 141.4 105 61.9
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 1.3e-31 140.2 125 63.2
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 1.7e-31 139.8 112 65.2
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 1.7e-31 139.8 103 65.0
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 2.9e-31 139.0 105 65.7
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 1.1e-30 137.1 121 64.5
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 3.2e-30 135.6 105 63.8
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 3.2e-30 135.6 105 64.8
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 4.1e-30 135.2 120 65.8
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 4.6e-29 131.7 106 63.2
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 6.0e-29 131.3 104 62.5
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 6.0e-29 131.3 104 62.5
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 6.6e-28 127.9 120 63.3
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 8.6e-28 127.5 122 60.7
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.5e-27 126.7 121 58.7
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 4.3e-27 125.2 116 58.6
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 1.6e-26 123.2 105 60.0
CARHR265890 Cardamine hirsuta HOM05D003466 ORTHO05D004102 4.7e-26 121.7 120 59.2
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 6.8e-25 117.9 90 70.0
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 4.4e-24 115.2 85 71.8
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 5.8e-24 114.8 104 56.7
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 5.8e-24 114.8 104 56.7
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 5.8e-24 114.8 107 57.9
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 9.8e-24 114.0 104 56.7
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 4.9e-23 111.7 109 58.7
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 9.2e-22 107.5 117 54.7
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 2.1e-21 106.3 74 67.6
COL.COLO4_23021 Corchorus olitorius HOM05D003466 ORTHO05D000454 2.1e-21 106.3 84 67.9
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 3.5e-21 105.5 112 56.2
COL.COLO4_17202 Corchorus olitorius HOM05D003466 ORTHO05D004102 3.5e-21 105.5 114 52.6
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 5.1e-20 101.7 121 52.1
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 1.1e-19 100.5 85 57.6
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 1.1e-19 100.5 85 57.6
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 1.1e-19 100.5 107 55.1
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.9e-19 99.8 69 79.7
AL8G27400 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 4.3e-19 98.6 112 47.3
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 4.3e-19 98.6 119 54.6
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 5.6e-19 98.2 119 53.8
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 5.6e-19 98.2 119 53.8
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 3.1e-17 92.4 106 54.7
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.2e-16 90.5 98 59.2
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 3.4e-16 89.0 111 51.4
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.5e-16 87.8 64 73.4
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.3e-15 87.0 92 59.8
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.3e-15 87.0 92 59.8
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 1.1e-14 84.0 114 51.8
vmacro20985 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 2.4e-14 82.8 99 52.5
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 6.0e-13 78.2 115 43.5
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 7.8e-13 77.8 65 56.9
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 4.7e-10 68.6 107 41.1
Atru.chr1.1444 Acer truncatum HOM05D003466 ORTHO05D004102 1.1e-09 67.4 46 80.4
RcHm_v2.0_Chr3g0479581 Rosa chinensis HOM05D003466 ORTHO05D004102 3.1e-09 65.9 89 50.6
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 1.2e-08 63.9 109 41.3
Rhsim07G0176000 Rhododendron simsii HOM05D003466 ORTHO05D004102 2.2e-07 59.7 71 53.5
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 8.4e-07 57.8 40 60.0


User provided reference genes

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