Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 0.0e+00 1361.7 665 100.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.2e-207 725.3 655 55.1
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.8e-205 719.9 654 55.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.3e-205 719.5 652 55.2
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.0e-205 719.2 627 56.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 9.7e-204 714.1 659 56.0
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.4e-202 710.3 657 54.6
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.8e-202 709.9 640 54.5
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 3.1e-202 709.1 674 53.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 9.0e-202 707.6 644 54.3
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.2e-201 707.2 652 56.0
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.5e-201 706.8 652 56.0
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.4e-201 705.7 631 55.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.4e-201 705.7 677 53.3
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.9e-201 704.9 670 53.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.0e-200 704.1 652 54.0
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.0e-200 704.1 639 54.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.0e-200 701.8 645 55.2
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 8.5e-200 701.0 635 54.2
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.1e-199 700.7 632 54.3
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.4e-199 700.3 650 54.2
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.4e-199 700.3 640 53.9
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 2.5e-199 699.5 671 53.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 3.2e-199 699.1 651 54.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 5.5e-199 698.4 638 53.3
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 9.4e-199 697.6 634 54.6
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.6e-198 695.3 636 53.9
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 6.1e-198 694.9 650 54.3
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 6.1e-198 694.9 681 53.2
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.0e-197 694.1 643 53.5
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.0e-197 694.1 657 54.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.4e-197 693.7 645 53.8
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 6.7e-197 691.4 651 54.1
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.7e-197 691.4 684 52.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.1e-196 690.6 650 54.0
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.3e-196 688.7 681 52.7
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 5.7e-196 688.3 642 53.3
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 9.7e-196 687.6 636 53.9
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.7e-196 687.6 651 53.8
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.8e-195 686.0 636 53.9
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.7e-195 685.6 651 54.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.7e-195 685.6 666 54.1
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.2e-195 684.5 657 53.0
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.1e-194 682.2 641 53.8
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 4.1e-194 682.2 643 53.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 9.1e-194 681.0 666 53.2
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.2e-192 676.4 695 50.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 3.8e-192 675.6 667 50.5
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.5e-191 672.9 646 52.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.5e-191 672.9 643 52.6
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 3.2e-191 672.5 643 52.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.5e-191 671.8 650 52.3
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.2e-191 671.4 685 51.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.4e-191 671.0 668 51.5
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-190 669.1 643 52.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.6e-190 669.1 643 52.4
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.7e-190 668.7 637 51.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 4.7e-190 668.7 670 51.5
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.9e-189 665.6 577 56.7
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.7e-189 664.8 643 52.4
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.1e-188 664.1 672 50.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.5e-188 663.7 659 51.0
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.5e-188 663.7 668 51.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.3e-188 662.5 635 52.9
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.3e-188 662.5 652 50.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.4e-188 662.1 653 50.4
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.7e-187 660.2 642 52.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.2e-187 659.8 638 52.5
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.7e-187 659.1 642 51.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.7e-187 659.1 639 52.1
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.8e-187 658.7 635 52.4
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 6.3e-187 658.3 636 51.6
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 8.2e-187 657.9 639 52.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.1e-186 657.5 673 50.4
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.4e-186 657.1 637 52.3
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.8e-186 656.8 642 52.0
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.8e-186 656.8 701 49.5
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.1e-186 655.6 668 50.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.2e-185 654.1 679 51.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.5e-185 653.7 641 50.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-185 653.3 643 51.5
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.5e-185 652.5 633 51.8
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.7e-185 651.4 643 51.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 7.7e-185 651.4 636 51.4
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 5.0e-184 648.7 635 51.8
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 6.5e-184 648.3 646 50.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.4e-183 647.1 637 50.9
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 4.2e-183 645.6 657 49.6
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 4.2e-183 645.6 638 52.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 5.5e-183 645.2 648 50.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.1e-182 643.3 637 49.8
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.7e-182 642.9 646 50.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.7e-182 642.1 678 49.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 6.1e-182 641.7 661 50.8
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.0e-181 641.0 638 50.9
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.9e-181 639.0 641 51.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.2e-181 638.6 647 49.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-180 637.1 599 54.4
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 9.7e-180 634.4 679 48.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.3e-179 634.0 637 50.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-179 633.3 566 55.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.4e-178 630.6 599 54.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 3.1e-178 629.4 636 51.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.2e-177 627.5 649 51.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.2e-176 623.2 593 53.5
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 6.5e-176 621.7 844 42.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.5e-175 619.8 681 48.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.8e-173 613.6 643 49.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 6.7e-173 611.7 645 48.2
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 4.4e-172 609.0 698 46.1
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.3e-171 607.4 649 48.4
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.1e-170 604.4 646 48.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 5.3e-170 602.1 563 55.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.5e-169 599.0 654 48.5
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-168 597.8 639 47.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-165 586.6 693 48.3
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 7.5e-164 581.6 638 46.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-160 571.2 699 45.6
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-159 567.4 648 46.8
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.9e-159 567.0 637 48.2
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.7e-155 552.7 641 47.4
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 4.3e-151 539.3 641 46.8
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.8e-150 536.6 681 43.9
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.7e-150 535.8 643 46.0
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.8e-148 528.9 656 44.4
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.1e-141 508.1 505 52.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.5e-140 504.2 502 51.6
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.8e-134 483.4 306 70.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.0e-133 479.6 345 65.2
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.3e-131 474.6 642 42.1
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 7.8e-129 465.3 532 47.0
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 5.1e-128 462.6 520 47.7
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-127 461.1 321 65.4
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.6e-126 457.6 417 51.8
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.8e-109 401.0 364 52.2
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.5e-103 381.3 289 60.6
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 4.8e-102 376.3 314 55.7
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 7.6e-92 342.4 214 73.4
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 4.3e-87 326.6 543 35.7
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.0e-83 315.5 311 46.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.7e-78 297.0 430 39.8
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.0e-72 278.9 550 33.5
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.3e-70 271.9 312 44.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.1e-69 267.3 363 42.1
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.5e-67 259.6 376 40.7
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 3.5e-52 210.7 152 61.8
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 3.8e-51 207.2 144 64.6
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 3.6e-49 200.7 156 59.6
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.7e-44 183.0 211 44.1
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.0e-43 182.6 304 39.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-42 177.2 223 42.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-37 162.5 123 62.6
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 5.4e-37 160.2 121 55.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 8.6e-35 152.9 99 67.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 8.6e-35 152.9 99 67.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 8.6e-35 152.9 99 67.7
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.5e-26 124.8 374 29.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-25 122.1 133 44.4
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.1e-21 107.5 246 32.5
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.8e-17 94.7 230 32.2
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.0e-15 88.6 161 37.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 7.1e-13 80.1 59 59.3
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-12 77.8 153 32.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 5.1e-11 73.9 82 47.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.9e-10 72.0 48 62.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.9e-10 72.0 48 62.5
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-10 71.2 72 45.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 5.6e-10 70.5 46 65.2
CDE06G1580 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 1.2e-09 69.3 34 91.2
CDE04G0048 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 8.9e-08 63.2 34 88.2


User provided reference genes

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