Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.5e-33 145.6 72 100.0
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.0e-29 132.9 73 90.4
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 3.8e-29 131.0 73 86.3
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 8.4e-29 129.8 73 86.3
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-28 129.4 73 84.9
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-28 129.0 70 85.7
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.4e-28 129.0 72 83.3
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 3.2e-28 127.9 73 84.9
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 4.2e-28 127.5 73 84.9
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 7.1e-28 126.7 70 84.3
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 7.1e-28 126.7 73 83.6
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 9.3e-28 126.3 73 84.9
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 84.9
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 81.4
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 82.2
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 82.2
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 4.6e-27 124.0 73 80.8
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.6e-27 124.0 73 83.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 4.6e-27 124.0 73 83.6
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 6.0e-27 123.6 70 81.4
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.0e-27 123.6 73 80.8
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 6.0e-27 123.6 72 80.6
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 7.9e-27 123.2 73 82.2
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 7.9e-27 123.2 73 80.8
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 7.9e-27 123.2 73 83.6
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 7.9e-27 123.2 71 84.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.0e-26 122.9 71 81.7
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.0e-26 122.9 71 81.7
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 1.0e-26 122.9 73 83.6
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.0e-26 122.9 70 80.0
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.0e-26 122.9 73 82.2
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.0e-26 122.9 74 79.7
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.3e-26 122.5 73 79.5
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 1.3e-26 122.5 74 79.7
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.3e-26 122.5 72 79.2
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 79.7
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 78.4
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 78.4
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 78.4
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 70 80.0
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 80.8
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 3.0e-26 121.3 70 80.0
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 78.4
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 78.4
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 82.4
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 82.4
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 82.4
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-26 121.3 74 82.4
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 3.9e-26 120.9 74 78.4
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 3.9e-26 120.9 73 79.5
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 3.9e-26 120.9 70 80.0
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 3.9e-26 120.9 73 80.8
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 5.1e-26 120.6 73 76.7
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 5.1e-26 120.6 71 81.7
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 6.7e-26 120.2 74 81.1
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.7e-26 120.2 74 81.1
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 6.7e-26 120.2 70 78.6
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 8.7e-26 119.8 71 83.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.1e-25 119.4 74 79.7
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-25 119.4 70 78.6
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.1e-25 119.4 70 78.6
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.1e-25 119.4 70 78.6
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.5e-25 119.0 71 78.9
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.5e-25 119.0 68 80.9
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.5e-25 119.0 70 77.1
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.9e-25 118.6 73 79.5
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 2.5e-25 118.2 74 77.0
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.5e-25 118.2 68 79.4
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 3.3e-25 117.9 73 79.5
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 3.3e-25 117.9 73 79.5
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.3e-25 117.9 70 75.7
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.3e-25 117.9 70 75.7
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 3.3e-25 117.9 73 79.5
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 3.3e-25 117.9 73 79.5
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.3e-25 117.5 70 78.6
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.3e-25 117.5 73 76.7
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 5.7e-25 117.1 73 75.3
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 7.4e-25 116.7 73 75.3
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 7.4e-25 116.7 74 75.7
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 7.4e-25 116.7 74 75.7
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 9.6e-25 116.3 67 80.6
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.3e-24 115.9 75 74.7
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.6e-24 115.5 73 78.1
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-24 115.5 76 76.3
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 2.1e-24 115.2 74 78.4
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 3.7e-24 114.4 74 75.7
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.7e-24 114.4 71 76.1
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 4.8e-24 114.0 63 84.1
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.8e-24 114.0 67 76.1
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 6.2e-24 113.6 73 74.0
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 8.2e-24 113.2 73 71.2
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 73 75.3
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 73 76.7
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.1e-23 112.8 73 76.7
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.4e-23 112.5 71 74.6
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.4e-23 112.5 71 76.1
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.4e-23 112.5 71 76.1
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.8e-23 112.1 63 82.5
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.8e-23 112.1 63 82.5
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.8e-23 112.1 63 82.5
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.8e-23 112.1 73 76.7
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.4e-23 111.7 70 74.3
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.4e-23 111.7 63 82.5
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 2.4e-23 111.7 63 82.5
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 2.4e-23 111.7 63 81.0
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.4e-23 111.7 63 82.5
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.4e-23 111.7 73 75.3
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 3.1e-23 111.3 71 74.6
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 4.0e-23 110.9 95 61.1
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 5.3e-23 110.5 65 76.9
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 9.0e-23 109.8 73 72.6
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 61 80.3
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.2e-22 109.4 68 69.1
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.2e-22 109.4 73 75.3
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.2e-22 109.4 79 73.4
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-22 109.0 61 83.6
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.5e-22 109.0 61 83.6
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-22 109.0 61 83.6
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.5e-22 109.0 61 83.6
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.5e-22 109.0 61 83.6
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.5e-22 109.0 61 83.6
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 2.6e-22 108.2 70 70.0
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.6e-22 108.2 68 69.1
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 5.8e-22 107.1 97 57.7
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.8e-22 107.1 90 63.3
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 5.8e-22 107.1 73 71.2
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 5.8e-22 107.1 101 58.4
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 5.8e-22 107.1 63 77.8
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 7.6e-22 106.7 68 69.1
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 7.6e-22 106.7 71 70.4
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 1.0e-21 106.3 72 70.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 73 68.5
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 5.0e-21 104.0 63 74.6
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 6.5e-21 103.6 65 72.3
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 6.5e-21 103.6 55 87.3
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 8.4e-21 103.2 61 75.4
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.1e-20 102.8 55 85.5
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.5e-20 101.7 73 67.1
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 4.2e-20 100.9 56 87.5
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.2e-20 100.9 61 73.8
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.1e-20 100.1 83 62.7
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.1e-20 100.1 56 85.7
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.2e-19 99.4 66 68.2
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.1e-19 98.6 57 80.7
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 2.1e-19 98.6 56 83.9
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 2.7e-19 98.2 100 53.0
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 4.6e-19 97.4 67 68.7
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 6.1e-19 97.1 55 78.2
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 6.1e-19 97.1 57 80.7
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 7.9e-19 96.7 56 80.4
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.0e-18 96.3 75 66.7
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.0e-18 94.7 72 62.5
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 3.0e-18 94.7 72 62.5
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 3.0e-18 94.7 56 76.8
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 6.7e-18 93.6 56 78.6
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.1e-17 92.8 53 77.4
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.5e-17 92.4 61 75.4
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.5e-17 91.7 55 74.5
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 4.3e-17 90.9 49 81.6
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.3e-17 90.9 55 74.5
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 9.7e-17 89.7 56 75.0
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 9.7e-17 89.7 56 76.8
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.3e-16 89.4 89 50.6
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.3e-16 89.4 56 71.4
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 6.3e-16 87.0 46 82.6
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 8.2e-16 86.7 56 75.0
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.1e-15 84.3 67 58.2
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 5.3e-15 84.0 62 59.7
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-14 82.8 58 67.2
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 4.5e-14 80.9 51 68.6
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.3e-13 79.3 56 64.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.9e-13 78.2 40 85.0
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.0e-13 77.4 52 73.1
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 8.5e-13 76.6 59 61.0
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 1.2e-11 72.8 67 55.2
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-11 72.0 58 63.8
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 4.6e-11 70.9 38 76.3
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.1e-11 70.5 53 64.2
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 3.0e-10 68.2 34 88.2
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.5e-09 65.9 45 77.8
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.8e-08 61.6 40 77.5
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 4.8e-08 60.8 40 70.0
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.5e-06 55.8 49 49.0


User provided reference genes

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