Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.5e-280 967.2 471 100.0
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.4e-235 818.1 474 85.4
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.1e-144 515.0 458 59.8
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 2.4e-140 503.1 456 59.2
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.2e-139 500.7 458 57.9
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 8.5e-138 494.6 485 55.7
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.5e-137 493.0 456 58.3
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 4.2e-137 492.3 475 56.2
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.6e-136 489.2 467 57.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 6.1e-136 488.4 458 56.8
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 6.1e-136 488.4 459 56.6
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.0e-135 485.7 471 55.2
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 6.7e-135 485.0 467 56.1
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.2e-134 484.2 474 55.9
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 4.4e-134 482.3 485 53.6
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.5e-134 481.5 480 55.6
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 9.7e-134 481.1 469 55.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.7e-133 480.3 459 56.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.8e-133 479.6 467 54.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 2.8e-133 479.6 479 55.1
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.7e-133 479.2 429 57.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-132 477.6 484 55.0
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 1.4e-132 477.2 458 55.7
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 1.8e-132 476.9 470 54.7
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.4e-132 476.5 459 56.4
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.4e-132 476.5 459 56.9
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 4.1e-132 475.7 466 54.3
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 5.3e-132 475.3 466 54.1
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 5.3e-132 475.3 467 55.0
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 5.3e-132 475.3 461 54.7
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 9.1e-132 474.6 463 55.1
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 9.1e-132 474.6 465 55.3
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 9.1e-132 474.6 466 54.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.2e-131 474.2 458 55.0
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.6e-131 473.8 473 53.7
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 2.0e-131 473.4 466 54.1
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.7e-131 473.0 460 54.6
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.5e-131 472.6 477 54.3
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 5.9e-131 471.9 455 55.4
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 7.7e-131 471.5 468 54.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.0e-130 471.1 467 54.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.3e-130 470.7 467 54.8
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.3e-130 470.7 456 56.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 2.9e-130 469.5 467 54.0
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 5.0e-130 468.8 466 54.5
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 8.5e-130 468.0 468 54.3
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 5.5e-129 465.3 469 53.3
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.2e-128 464.2 465 54.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.6e-128 463.8 468 55.6
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 2.1e-128 463.4 509 51.3
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.7e-128 463.0 469 54.6
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 6.1e-128 461.8 468 54.7
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.4e-127 460.7 458 53.9
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-127 460.3 468 53.6
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.8e-127 460.3 475 53.3
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.3e-127 459.9 460 53.9
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.8e-127 458.4 468 54.7
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 6.8e-127 458.4 472 53.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 6.8e-127 458.4 474 54.6
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 8.8e-127 458.0 411 59.4
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 1.2e-126 457.6 470 53.4
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.0e-126 456.8 427 56.2
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 2.6e-126 456.4 462 53.0
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 7.5e-126 454.9 459 54.2
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 7.5e-126 454.9 459 54.2
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 9.8e-126 454.5 459 54.0
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.3e-125 454.1 458 54.6
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.8e-125 453.0 469 54.6
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 2.8e-125 453.0 461 52.7
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 6.3e-125 451.8 450 54.0
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 6.3e-125 451.8 465 52.7
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 8.3e-125 451.4 516 50.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.1e-124 449.1 483 50.7
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 7.0e-124 448.4 464 53.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 7.0e-124 448.4 472 52.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.2e-123 447.6 466 52.4
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.6e-123 447.2 460 52.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.7e-123 446.4 466 52.6
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 3.5e-123 446.0 473 51.8
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 4.5e-123 445.7 459 53.4
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.5e-123 445.7 413 58.6
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.0e-122 444.5 444 52.9
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.3e-122 444.1 463 52.5
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 2.9e-122 443.0 482 50.4
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 5.0e-122 442.2 463 51.6
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.5e-121 439.9 421 55.3
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 3.3e-121 439.5 476 50.8
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 7.2e-121 438.3 466 51.7
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 9.5e-121 438.0 463 54.6
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.6e-120 437.2 477 50.5
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.1e-120 436.8 472 52.8
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 6.1e-120 435.3 427 53.9
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.0e-119 434.5 479 50.7
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 3.0e-119 433.0 459 50.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 3.0e-119 433.0 420 55.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 5.2e-119 432.2 473 50.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 5.2e-119 432.2 462 50.6
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-118 430.6 463 52.3
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.0e-118 430.3 461 52.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.6e-118 429.9 464 50.9
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 5.7e-118 428.7 463 51.4
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 7.5e-118 428.3 473 51.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 7.5e-118 428.3 463 52.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 7.5e-118 428.3 470 51.9
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.2e-117 426.8 455 51.0
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 6.3e-117 425.2 481 49.1
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.3e-117 425.2 468 52.8
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 8.3e-117 424.9 473 51.4
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.1e-116 424.5 478 50.6
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 4.1e-116 422.5 480 49.2
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 5.4e-116 422.2 478 49.4
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 5.4e-116 422.2 438 51.8
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 7.0e-116 421.8 476 49.2
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 7.0e-116 421.8 465 51.2
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.6e-115 420.6 463 51.6
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.6e-115 420.6 467 50.5
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.7e-115 419.9 459 52.1
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 5.9e-115 418.7 448 51.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.1e-113 414.5 445 50.3
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.3e-113 412.9 425 51.3
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 4.3e-113 412.5 437 50.8
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 9.5e-113 411.4 564 44.3
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 3.6e-112 409.5 461 48.6
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.8e-111 407.1 427 52.2
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 3.1e-111 406.4 459 49.9
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 3.4e-110 402.9 459 49.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.3e-109 401.0 428 50.5
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 6.6e-106 388.7 403 53.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 4.7e-104 382.5 515 44.9
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 2.9e-101 373.2 449 47.0
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.2e-99 367.9 475 46.7
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.2e-99 367.9 422 49.5
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.6e-99 367.5 422 49.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 2.7e-99 366.7 467 45.8
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.9e-98 362.8 464 44.8
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 2.5e-97 360.1 472 44.9
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 4.3e-97 359.4 459 46.2
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 8.3e-93 345.1 313 58.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.4e-87 327.8 427 45.9
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.8e-87 325.5 426 43.9
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.9e-84 317.4 432 43.5
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 7.1e-84 315.5 388 47.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.5e-75 286.6 424 39.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 7.1e-68 262.3 430 37.2
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 6.0e-67 259.2 424 37.7
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.5e-62 244.6 462 36.6
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.0e-61 241.9 284 46.5
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.7e-53 214.5 438 33.3
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.8e-45 186.8 274 41.2
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 4.2e-44 183.3 405 31.9
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.1e-41 175.3 227 43.6
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 3.7e-32 143.7 128 56.2
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 4.1e-31 140.2 282 34.4
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 3.8e-29 133.7 183 42.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-22 112.1 126 43.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.2e-21 107.8 84 61.9
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 2.5e-20 104.4 141 44.7
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-20 104.4 125 40.8
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 4.4e-17 93.6 389 23.7
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 9.8e-17 92.4 110 46.4
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.7e-16 90.5 79 58.2
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.7e-16 90.5 79 58.2
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.2e-06 58.9 66 47.0


User provided reference genes

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