Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.2e-74 283.1 151 100.0
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.0e-64 249.2 142 88.0
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 4.4e-27 125.2 144 54.2
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.2e-26 122.9 135 56.3
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.7e-26 122.1 152 48.0
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 8.2e-26 120.9 152 50.7
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.3e-25 118.2 135 52.6
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.2e-24 117.1 88 63.6
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.5e-24 116.7 88 67.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 4.5e-24 115.2 88 64.8
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 5.9e-24 114.8 87 66.7
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.9e-24 114.8 87 66.7
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 7.7e-24 114.4 79 69.6
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 7.7e-24 114.4 88 63.6
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.3e-23 113.6 87 64.4
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.7e-23 113.2 87 65.5
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 2.9e-23 112.5 79 68.4
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 3.8e-23 112.1 87 64.4
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 6.5e-23 111.3 87 63.2
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 6.5e-23 111.3 165 47.3
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 8.5e-23 110.9 87 63.2
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 8.5e-23 110.9 82 68.3
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.1e-22 110.5 156 48.1
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.1e-22 110.5 86 64.0
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.1e-22 110.5 88 62.5
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.4e-22 110.2 88 62.5
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 1.4e-22 110.2 155 51.0
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.4e-22 110.2 80 67.5
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.9e-22 109.8 160 46.9
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.5e-22 109.4 79 67.1
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.5e-22 109.4 150 48.7
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.2e-22 108.6 86 61.6
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.2e-22 108.6 86 61.6
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 4.2e-22 108.6 86 61.6
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.5e-22 108.2 90 62.2
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.5e-22 108.2 90 62.2
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 5.5e-22 108.2 86 61.6
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 5.5e-22 108.2 141 51.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 7.2e-22 107.8 80 66.2
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 7.2e-22 107.8 90 62.2
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 9.4e-22 107.5 87 62.1
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 9.4e-22 107.5 151 49.0
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.2e-21 107.1 79 65.8
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.2e-21 107.1 80 68.8
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.6e-21 106.7 82 63.4
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 2.1e-21 106.3 162 47.5
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.6e-21 105.5 164 43.3
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 4.7e-21 105.1 87 58.6
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 4.7e-21 105.1 80 66.2
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 4.7e-21 105.1 84 64.3
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 6.1e-21 104.8 86 60.5
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 6.1e-21 104.8 89 58.4
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 7.9e-21 104.4 82 64.6
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.0e-20 104.0 169 45.6
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 1.4e-20 103.6 82 64.6
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.8e-20 103.2 80 61.2
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.3e-20 102.8 80 62.5
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 3.0e-20 102.4 86 58.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 3.0e-20 102.4 86 58.1
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 3.0e-20 102.4 171 48.0
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 3.9e-20 102.1 86 59.3
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 3.9e-20 102.1 86 60.5
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 8.8e-20 100.9 129 45.7
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 8.8e-20 100.9 173 43.9
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 8.8e-20 100.9 86 59.3
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.1e-19 100.5 80 58.8
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 4.4e-19 98.6 83 57.8
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 5.7e-19 98.2 142 42.3
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 9.7e-19 97.4 80 58.8
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.2e-18 96.3 80 58.8
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.8e-18 95.9 128 44.5
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 6.3e-18 94.7 154 46.1
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 8.2e-18 94.4 69 66.7
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.1e-17 94.0 84 58.3
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 1.1e-17 94.0 84 58.3
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.4e-17 93.6 118 49.2
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.8e-17 93.2 79 59.5
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 2.4e-17 92.8 79 59.5
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 4.1e-17 92.0 79 58.2
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 7.0e-17 91.3 79 57.0
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 5.9e-16 88.2 79 54.4
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 7.7e-16 87.8 82 51.2
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 2.2e-15 86.3 104 48.1
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.9e-15 85.9 78 53.8
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 6.5e-15 84.7 76 59.2
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 1.1e-14 84.0 75 54.7
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 3.2e-14 82.4 68 60.3
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.6e-13 80.1 107 44.9
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.6e-13 80.1 77 49.4
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.6e-13 80.1 77 49.4
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 1.6e-13 80.1 80 51.2
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 4.7e-13 78.6 77 49.4
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 4.7e-13 78.6 77 49.4
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 4.7e-13 78.6 77 49.4
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 6.1e-13 78.2 77 53.2
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 6.1e-13 78.2 81 53.1
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 8.0e-13 77.8 87 50.6
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.0e-12 77.4 84 51.2
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.8e-12 76.6 84 51.2
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-12 76.6 122 42.6
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.8e-12 76.6 59 59.3
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 3.0e-12 75.9 87 49.4
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 5.2e-12 75.1 85 49.4
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 1.2e-11 73.9 84 50.0
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 5.7e-11 71.6 80 46.2
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 5.7e-11 71.6 83 48.2
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.7e-10 70.1 84 46.4
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 4.8e-10 68.6 152 38.8
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 6.3e-10 68.2 100 47.0
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 5.3e-09 65.1 76 51.3
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 5.3e-09 65.1 76 51.3
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 5.3e-09 65.1 50 58.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 2.0e-08 63.2 68 48.5
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 7.7e-08 61.2 48 58.3
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 7.7e-08 61.2 82 47.6
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 9.4e-06 54.3 34 70.6


User provided reference genes

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