Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 8.0e-74 280.4 150 100.0
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 1.2e-32 143.7 90 84.4
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 3.2e-22 109.0 133 46.6
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 1.0e-20 104.0 137 47.4
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 8.2e-18 94.4 118 44.1
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 1.1e-17 94.0 141 40.4
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 4.1e-17 92.0 130 42.3
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 9.0e-17 90.9 129 43.4
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 1.2e-16 90.5 117 43.6
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 2.6e-16 89.4 142 38.0
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.4e-16 89.0 139 36.7
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 5.9e-16 88.2 122 41.0
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 7.6e-16 87.8 129 40.3
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.0e-15 87.4 128 39.1
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 1.3e-15 87.0 138 39.1
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.3e-15 87.0 113 45.1
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 2.2e-15 86.3 129 39.5
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 2.2e-15 86.3 137 42.3
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 2.9e-15 85.9 120 40.8
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 2.9e-15 85.9 141 36.2
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 5.0e-15 85.1 138 41.3
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 5.0e-15 85.1 127 41.7
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 8.5e-15 84.3 122 41.0
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 1.1e-14 84.0 112 43.8
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.1e-14 84.0 129 39.5
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.1e-14 84.0 130 37.7
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.9e-14 83.2 127 40.9
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 4.2e-14 82.0 139 37.4
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.5e-14 81.6 132 37.9
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 7.2e-14 81.3 120 39.2
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 9.3e-14 80.9 118 41.5
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 1.2e-13 80.5 120 40.8
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 1.6e-13 80.1 126 40.5
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 1.6e-13 80.1 124 36.3
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 1.6e-13 80.1 129 38.0
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 1.6e-13 80.1 117 40.2
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 2.1e-13 79.7 130 37.7
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 2.1e-13 79.7 130 36.2
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 2.7e-13 79.3 122 37.7
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 2.7e-13 79.3 130 37.7
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 2.7e-13 79.3 133 38.3
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 3.6e-13 79.0 138 37.7
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.6e-13 78.6 132 36.4
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 6.1e-13 78.2 108 43.5
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 6.1e-13 78.2 149 36.9
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 6.1e-13 78.2 118 39.0
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 6.1e-13 78.2 128 35.2
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 6.1e-13 78.2 140 39.3
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 7.9e-13 77.8 120 40.0
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 1.0e-12 77.4 120 40.0
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.0e-12 77.4 107 39.3
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 1.4e-12 77.0 120 40.8
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.4e-12 77.0 132 35.6
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 3.0e-12 75.9 178 32.6
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 3.0e-12 75.9 118 40.7
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 3.9e-12 75.5 124 36.3
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 3.9e-12 75.5 120 39.2
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 3.9e-12 75.5 129 38.8
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 5.1e-12 75.1 118 35.6
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 6.7e-12 74.7 139 38.1
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 6.7e-12 74.7 133 35.3
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 1.1e-11 73.9 118 42.4
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 1.9e-11 73.2 135 35.6
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 2.5e-11 72.8 107 38.3
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 3.3e-11 72.4 155 33.5
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 4.3e-11 72.0 108 38.9
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 4.3e-11 72.0 151 33.1
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 4.3e-11 72.0 126 35.7
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 4.3e-11 72.0 120 40.0
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 5.7e-11 71.6 139 36.7
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 7.4e-11 71.2 120 38.3
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 9.7e-11 70.9 132 33.3
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 2.2e-10 69.7 182 31.9
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 2.2e-10 69.7 132 33.3
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 2.8e-10 69.3 129 35.7
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 3.7e-10 68.9 126 35.7
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 3.7e-10 68.9 132 35.6
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 1.4e-09 67.0 116 37.1
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 1.8e-09 66.6 152 33.6
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.8e-09 66.6 111 34.2
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 2.4e-09 66.2 111 34.2
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.1e-09 65.9 111 34.2
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.1e-09 65.5 111 34.2
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.1e-09 65.5 111 34.2
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 4.1e-09 65.5 114 35.1
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 5.3e-09 65.1 107 37.4
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 6.9e-09 64.7 107 36.4
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 9.1e-09 64.3 145 29.7
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 5.9e-08 61.6 111 33.3
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 5.9e-08 61.6 113 32.7
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 5.9e-08 61.6 219 26.5
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 5.9e-08 61.6 120 35.0
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 2.2e-07 59.7 119 33.6
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 2.9e-07 59.3 106 36.8
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 2.9e-07 59.3 147 30.6
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 3.8e-07 58.9 130 31.5
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 6.5e-07 58.2 106 35.8
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 8.5e-07 57.8 149 30.2
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 1.1e-06 57.4 132 26.5
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.1e-06 57.4 132 31.8
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.1e-06 57.4 132 31.8
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 1.4e-06 57.0 121 33.9
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.4e-06 57.0 46 58.7
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 3.2e-06 55.8 135 27.4
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 3.2e-06 55.8 135 27.4
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 3.2e-06 55.8 135 27.4
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 4.2e-06 55.5 132 26.5
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 4.2e-06 55.5 108 33.3
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 9.4e-06 54.3 110 32.7


User provided reference genes

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