Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 6.1e-264 913.7 491 100.0
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.5e-214 749.6 502 83.9
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 3.9e-101 372.9 467 51.6
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 4.3e-92 342.8 484 47.5
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 9.6e-92 341.7 476 47.5
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 2.1e-91 340.5 426 50.7
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.1e-90 338.2 429 49.2
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 6.9e-90 335.5 494 45.3
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.5e-89 334.3 453 47.0
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.6e-89 333.6 425 50.1
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.6e-89 333.6 453 47.2
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.9e-88 330.1 506 46.8
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 6.5e-88 328.9 431 49.4
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.9e-87 327.4 443 47.9
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 2.5e-87 327.0 462 48.3
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.2e-87 326.6 449 47.2
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 9.3e-87 325.1 452 46.5
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.2e-86 324.7 490 47.3
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.2e-86 324.7 468 45.9
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.6e-86 324.3 488 46.7
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 2.1e-86 323.9 494 46.8
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.1e-86 323.9 467 47.1
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.1e-86 323.9 435 46.7
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 2.7e-86 323.6 495 44.8
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 3.5e-86 323.2 478 45.6
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 3.5e-86 323.2 473 45.2
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 3.5e-86 323.2 468 47.9
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 6.0e-86 322.4 449 47.2
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 6.0e-86 322.4 446 46.6
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-85 321.2 473 45.2
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.3e-85 321.2 498 45.0
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 3.0e-85 320.1 502 44.8
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 1.1e-84 318.2 472 46.0
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 4.3e-84 316.2 409 50.1
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 5.7e-84 315.8 477 44.9
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 7.4e-84 315.5 437 48.7
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 7.4e-84 315.5 449 47.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 1.3e-83 314.7 488 45.9
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.8e-83 313.5 499 45.9
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 3.7e-83 313.2 499 44.5
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 4.8e-83 312.8 483 44.3
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 4.8e-83 312.8 450 46.7
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.1e-82 311.6 485 45.4
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.1e-82 311.6 483 46.4
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.1e-82 311.6 451 43.9
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.4e-82 311.2 486 45.3
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.8e-82 310.8 432 48.1
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.4e-82 310.5 484 45.2
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 6.9e-82 308.9 491 45.6
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 6.9e-82 308.9 488 43.9
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 6.9e-82 308.9 474 45.6
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.2e-81 308.1 439 46.2
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.0e-81 307.4 449 46.3
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 3.4e-81 306.6 434 47.2
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 3.4e-81 306.6 470 44.3
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 4.5e-81 306.2 433 47.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 4.5e-81 306.2 452 45.1
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 4.5e-81 306.2 440 46.1
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 7.6e-81 305.4 498 46.6
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 6.5e-80 302.4 466 44.8
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.4e-79 301.2 479 44.1
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.9e-79 300.8 446 46.9
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.9e-79 300.8 496 44.6
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 5.5e-79 299.3 447 45.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 9.3e-79 298.5 497 43.5
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.6e-78 297.7 444 45.7
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 2.7e-78 297.0 486 43.4
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.7e-78 297.0 474 43.7
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.7e-78 297.0 420 46.4
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.1e-78 295.8 496 44.4
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.1e-78 295.8 496 44.2
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 1.8e-77 294.3 437 45.5
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 5.1e-77 292.7 469 44.8
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 6.7e-77 292.4 426 46.9
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.1e-76 291.6 494 43.9
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 2.5e-76 290.4 435 46.4
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 7.4e-76 288.9 505 41.6
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 9.7e-76 288.5 428 44.6
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 9.7e-76 288.5 436 46.1
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.3e-75 288.1 456 43.4
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 1.3e-75 288.1 504 41.7
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.6e-75 287.7 420 46.7
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 2.2e-75 287.3 440 46.4
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 8.2e-75 285.4 490 42.7
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.8e-74 284.3 442 45.5
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 6.9e-74 282.3 514 42.4
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.2e-73 281.6 472 43.9
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.5e-73 281.2 435 44.6
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 2.0e-73 280.8 447 44.7
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 2.6e-73 280.4 503 41.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 3.4e-73 280.0 449 43.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.4e-73 280.0 477 42.8
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.5e-73 279.6 475 42.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.5e-73 279.6 434 44.9
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 7.7e-73 278.9 471 42.9
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 7.7e-73 278.9 571 38.4
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.7e-72 277.7 489 41.9
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 6.5e-72 275.8 465 43.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 8.5e-72 275.4 439 44.6
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 9.4e-71 271.9 499 40.7
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.2e-70 271.6 466 42.5
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.7e-70 270.4 471 42.0
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.6e-70 270.0 335 49.0
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 7.9e-70 268.9 376 46.5
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.3e-69 267.3 460 43.0
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.0e-65 254.2 429 43.6
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.6e-65 253.8 440 43.9
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 2.6e-65 253.8 498 39.0
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 3.8e-64 250.0 482 40.2
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 6.5e-64 249.2 363 44.4
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.4e-63 248.1 463 40.8
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.9e-63 247.7 439 41.7
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 3.0e-61 240.4 539 35.3
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.9e-61 240.0 498 38.4
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.1e-60 238.4 450 39.6
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 7.4e-60 235.7 412 40.5
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.8e-58 231.1 306 49.0
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.9e-56 223.8 269 52.4
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 8.5e-56 222.2 474 38.4
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 8.5e-56 222.2 266 52.3
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.2e-54 218.4 447 39.6
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.4e-53 214.9 371 40.4
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 5.2e-53 213.0 267 52.1
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 2.2e-48 197.6 449 36.3
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.1e-47 195.3 462 32.9
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 3.0e-45 187.2 276 45.7
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.0e-42 176.0 470 35.7
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 8.5e-40 169.1 473 32.8
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 8.0e-38 162.5 280 42.1
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 8.3e-35 152.5 445 31.5
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.4e-34 151.8 240 43.8
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 4.1e-26 123.6 455 28.1
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 8.0e-22 109.4 190 41.6
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 3.1e-21 107.5 192 39.6
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 9.8e-20 102.4 65 72.3
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.4e-19 99.8 103 60.2
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.9e-18 98.2 93 53.8
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 9.2e-18 95.9 178 39.3
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.6e-17 95.1 293 29.0
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 6.0e-17 93.2 67 65.7
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 6.0e-17 93.2 172 39.0
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 7.8e-17 92.8 180 36.1
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 2.3e-16 91.3 301 29.9
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.0e-16 90.9 136 41.2
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 4.3e-15 87.0 190 37.4
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 5.2e-13 80.1 393 24.9
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 1.5e-12 78.6 194 34.5
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.4e-12 77.4 104 39.4
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.5e-12 76.3 104 44.2
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 9.8e-12 75.9 73 53.4
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 6.4e-11 73.2 105 41.9
CDE04G2584 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 4.6e-09 67.0 37 91.9
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.1e-08 63.5 165 40.0
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 8.6e-08 62.8 253 30.8
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 9.5e-07 59.3 159 37.1
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 4.7e-06 57.0 105 41.0


User provided reference genes

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