Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 4.7e-58 227.6 114 100.0
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 6.6e-44 180.6 109 83.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 5.1e-12 74.7 109 43.1
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.5e-11 72.4 60 63.3
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 4.3e-11 71.6 63 57.1
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 4.3e-11 71.6 86 47.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 7.4e-11 70.9 122 42.6
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 9.6e-11 70.5 60 58.3
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.3e-10 70.1 112 42.0
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.6e-10 69.7 59 59.3
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-10 69.7 123 39.0
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.6e-10 68.6 69 53.6
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.2e-10 67.8 89 49.4
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 6.2e-10 67.8 59 61.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 6.2e-10 67.8 60 56.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 8.1e-10 67.4 69 53.6
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.1e-09 67.0 99 42.4
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.8e-09 66.2 68 50.0
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.4e-09 65.9 59 55.9
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.4e-09 65.9 59 55.9
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.4e-09 65.9 59 55.9
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 3.1e-09 65.5 59 54.2
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.1e-09 65.5 69 50.7
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.1e-09 65.5 60 55.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 4.0e-09 65.1 85 47.1
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 4.0e-09 65.1 60 55.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.3e-09 64.7 121 39.7
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 6.9e-09 64.3 112 38.4
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.2e-08 63.5 69 49.3
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.2e-08 63.5 59 54.2
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.2e-08 63.5 69 47.8
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.5e-08 63.2 112 37.5
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.0e-08 62.8 68 47.1
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.0e-08 62.8 68 51.5
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.0e-08 62.8 65 50.8
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.0e-08 62.8 108 37.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.6e-08 62.4 80 48.8
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.6e-08 62.4 60 55.0
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.6e-08 62.4 69 47.8
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.4e-08 62.0 59 50.8
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.4e-08 62.0 119 39.5
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.5e-08 61.6 97 36.1
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 5.8e-08 61.2 56 53.6
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 5.8e-08 61.2 59 55.9
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.8e-08 61.2 65 49.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 7.6e-08 60.8 113 36.3
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 7.6e-08 60.8 59 52.5
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 7.6e-08 60.8 59 52.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 9.9e-08 60.5 68 48.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 9.9e-08 60.5 118 39.0
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.3e-07 60.1 88 43.2
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.3e-07 60.1 59 49.2
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.3e-07 60.1 59 49.2
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.3e-07 60.1 58 53.4
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.7e-07 59.7 119 38.7
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.7e-07 59.7 119 37.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.7e-07 59.7 83 44.6
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 2.2e-07 59.3 114 37.7
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.2e-07 59.3 59 50.8
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.2e-07 59.3 80 47.5
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.2e-07 59.3 118 38.1
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 3.8e-07 58.5 118 35.6
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 4.9e-07 58.2 60 50.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 4.9e-07 58.2 59 49.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.9e-07 58.2 59 54.2
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 6.4e-07 57.8 59 47.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 6.4e-07 57.8 112 36.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 6.4e-07 57.8 59 52.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 6.4e-07 57.8 59 52.5
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 6.4e-07 57.8 62 48.4
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 6.4e-07 57.8 62 48.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 8.4e-07 57.4 65 49.2
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 8.4e-07 57.4 109 35.8
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.1e-06 57.0 59 54.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-06 57.0 93 36.6
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-06 56.6 107 36.4
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 1.4e-06 56.6 65 47.7
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.4e-06 56.6 117 38.5
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.9e-06 56.2 59 50.8
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-06 56.2 116 38.8
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.9e-06 56.2 66 50.0
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.4e-06 55.8 83 39.8
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 3.2e-06 55.5 65 43.1
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 4.2e-06 55.1 85 40.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.2e-06 55.1 60 50.0
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 5.5e-06 54.7 59 47.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 7.1e-06 54.3 85 40.0
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 7.1e-06 54.3 85 40.0
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.1e-06 54.3 55 50.9
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.3e-06 53.9 60 50.0


User provided reference genes

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