Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 0.0e+00 2266.9 1170 100.0
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 0.0e+00 1333.2 1177 67.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.2e-86 325.1 1654 27.1
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.4e-85 322.4 1492 28.2
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 2.5e-85 321.6 1457 29.0
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 8.7e-83 313.2 1675 27.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.1e-80 306.2 1575 28.8
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.1e-80 304.7 1586 27.0
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 5.3e-80 303.9 1643 26.5
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 5.9e-79 300.4 1571 28.1
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.0e-78 299.7 1605 27.4
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.9e-78 298.1 1601 27.0
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.1e-77 296.2 1601 27.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.9e-77 295.4 1584 26.8
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 5.5e-77 293.9 1602 26.2
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 7.2e-77 293.5 1566 27.9
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.2e-76 292.7 1556 28.0
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 2.1e-76 292.0 1528 28.1
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 7.9e-76 290.0 1446 27.7
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.4e-75 289.3 1333 28.4
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.8e-75 288.9 1728 26.2
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 3.9e-75 287.7 1637 26.1
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.5e-74 285.8 1552 27.6
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 2.5e-74 285.0 1557 27.6
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 2.5e-74 285.0 506 40.7
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 5.7e-74 283.9 1596 26.8
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 2.2e-73 282.0 1637 26.6
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 6.3e-73 280.4 1267 28.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 8.2e-73 280.0 1645 26.6
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.8e-72 278.9 1158 29.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 2.0e-71 275.4 1457 28.4
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.0e-70 273.1 1551 26.2
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.0e-70 273.1 478 41.4
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 2.9e-70 271.6 1359 28.0
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.4e-69 269.2 1389 26.1
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 5.5e-69 267.3 1490 27.1
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 2.7e-68 265.0 1531 27.0
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 4.7e-68 264.2 1246 27.9
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 7.9e-68 263.5 1559 27.3
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.0e-67 263.1 1249 27.8
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.8e-67 262.3 1457 26.9
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.1e-67 260.8 1546 26.7
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 5.1e-67 260.8 542 37.6
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 6.7e-67 260.4 1544 26.6
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 8.8e-67 260.0 1577 27.1
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.1e-66 259.6 478 40.4
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 4.4e-66 257.7 1472 26.1
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.4e-66 256.9 1588 26.2
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.4e-66 256.9 1567 26.5
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.7e-65 255.8 1571 25.6
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 2.2e-65 255.4 1487 26.5
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.7e-65 254.6 1587 25.8
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 6.3e-65 253.8 457 39.6
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 8.2e-65 253.4 1477 26.3
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.4e-64 252.7 1522 26.2
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.8e-64 252.3 1505 27.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.4e-64 251.9 1597 25.7
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 1.5e-63 249.2 401 41.9
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.0e-63 248.8 1617 26.3
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.4e-63 248.1 1520 25.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 4.5e-63 247.7 1559 26.6
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.9e-63 247.3 1446 25.9
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.7e-62 245.7 1524 25.8
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 3.8e-62 244.6 1538 27.6
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 6.5e-62 243.8 1253 28.6
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.1e-61 243.0 1584 26.3
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 2.5e-61 241.9 1366 26.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 3.2e-61 241.5 1403 27.9
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 3.2e-61 241.5 1456 26.4
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 7.2e-61 240.4 1577 26.2
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 9.4e-61 240.0 1424 26.5
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 3.6e-60 238.0 1421 26.5
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 3.6e-60 238.0 430 43.0
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 8.0e-60 236.9 1070 28.9
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.8e-59 235.7 1573 25.1
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.5e-58 232.6 338 47.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.5e-58 232.6 549 37.2
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.5e-58 232.6 1552 25.7
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 5.7e-58 230.7 1416 25.9
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 5.7e-58 230.7 1431 26.1
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 9.7e-58 229.9 1459 27.0
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.7e-57 229.2 1256 27.4
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 4.8e-57 227.6 1449 26.7
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 6.3e-57 227.3 1457 26.4
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 6.3e-57 227.3 1417 25.8
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 6.3e-57 227.3 1653 24.4
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 2.4e-56 225.3 195 62.6
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.4e-56 225.3 213 60.1
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 3.1e-56 224.9 1552 25.6
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 4.1e-56 224.6 1451 26.6
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 5.3e-56 224.2 1465 25.9
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.6e-55 222.6 557 36.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.6e-55 222.6 1452 25.6
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.0e-55 222.2 1606 24.6
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 3.5e-55 221.5 1566 25.7
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.5e-55 221.1 1405 26.3
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.3e-54 219.5 1609 24.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 5.0e-54 217.6 481 34.3
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 6.5e-54 217.2 1483 24.9
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 7.2e-53 213.8 1452 24.8
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 7.2e-53 213.8 1573 24.6
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 4.0e-51 208.0 1408 25.4
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 5.2e-51 207.6 1438 26.3
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 1.2e-50 206.5 1542 25.6
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 5.7e-50 204.1 1238 26.1
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 3.7e-49 201.4 184 62.5
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.1e-48 199.9 1421 25.8
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.6e-47 196.1 1482 25.2
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.5e-47 194.9 1612 24.1
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 5.9e-47 194.1 470 34.3
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 1.0e-46 193.4 1401 24.6
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.1e-45 189.9 1487 25.7
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.5e-45 189.5 395 37.5
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 7.2e-45 187.2 1385 25.8
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 6.8e-43 180.6 1585 24.5
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 6.8e-43 180.6 1503 25.6
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.8e-43 180.3 215 53.0
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.2e-42 179.9 514 34.0
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.5e-42 179.5 1367 25.2
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 7.5e-42 177.2 1591 24.8
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 4.8e-41 174.5 1425 25.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 4.8e-41 174.5 1481 25.2
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.7e-39 168.7 363 34.2
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 3.5e-39 168.3 641 29.5
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 5.0e-38 164.5 624 29.6
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.4e-35 156.4 632 31.3
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 6.8e-35 154.1 228 45.6
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.2e-34 153.3 1494 23.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.5e-29 136.3 698 28.8
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 5.2e-27 127.9 280 41.1
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 9.8e-26 123.6 1005 23.8
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.9e-25 121.3 443 31.8
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.5e-23 115.2 88 69.3
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.5e-23 115.2 513 28.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.3e-22 113.2 1284 24.8
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 9.5e-21 107.1 467 30.4
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 3.1e-19 102.1 216 36.1
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.9e-17 94.7 455 27.7
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.2e-16 92.0 240 34.2
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.3e-14 85.9 1447 22.5
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.3e-13 81.6 1318 21.9
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 6.2e-12 77.8 207 31.4
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.2e-10 73.6 599 26.9
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 7.5e-10 70.9 1331 22.8
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 9.9e-10 70.5 408 27.7
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 5.1e-06 58.2 148 31.8
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 5.1e-06 58.2 148 31.8


User provided reference genes

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